Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38460 376 / 5e-131 GGR geranylgeranyl reductase (.1) AT4G36810 251 / 2e-81 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 228 / 2e-72 Terpenoid synthases superfamily protein (.1) AT2G18640 213 / 2e-66 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT2G23800 210 / 3e-65 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 208 / 7e-65 Terpenoid synthases superfamily protein (.1) AT3G14550 202 / 2e-62 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14510 196 / 7e-61 Polyprenyl synthetase family protein (.1) AT3G14530 198 / 9e-61 Terpenoid synthases superfamily protein (.1) AT3G29430 190 / 1e-57 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 239 / 3e-76 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 238 / 3e-76 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 229 / 2e-72 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 226 / 1e-70 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 223 / 3e-70 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 218 / 2e-68 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 216 / 1e-67 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 211 / 2e-65 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 159 / 2e-47 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179628 [exp] 466 / 5e-166 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 458 / 4e-163 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G090600 [exp] 246 / 3e-79 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 243 / 2e-78 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 231 / 2e-73 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 228 / 3e-72 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 214 / 6e-67 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.015G043400 [exp] 149 / 3e-42 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 67 / 5e-12 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.010G138800 [exp] 63 / 6e-11 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10025096 pacid=23167772 polypeptide=Lus10025096 locus=Lus10025096.g ID=Lus10025096.BGIv1.0 annot-version=v1.0 ATGGCATCTTCGGCAATGCTTTCACTACCGTTATCGCTGCGATCGTCGCCCCCGGTGGCGAGAATGCGGTTGAAACTTCCGATAATTCGTTGTTCAATTT CATCTTCGTCTACCCAATCAAAATTCGATTTGCAGACGTATTGGGCTTCCCTTAGGGAGGAGATCAACCAGAAGCTGGACCAGGCGATTCCGATTCGGTA CCCTGAACGAATCTACGAAGCGATGAGGTACTCCACGCTTGCCCAAGGCGCCAAACGAGCTCCTCCCGTCATGTGCGTTGCTTCCTGTGAGCTCTTCGGT CTCGATCGCCTCGCCGCTTTCCCTACCGCTTGTGCCCTGGAAATGGTACACGCAGCCTCACTGATCCACGATGATCTCCCATCCATGGACGATGCCCCAT CTCGACGAGGCCAACCCTCGAACCACACAGTCCACGGGGTAGACATGGCAATACTCGCAGGGGATGCACTTTTCCCTCTAGGATTCAGCCACATTGTCGA CAACACGCCCACAGACCTCGTACCGGAGACACGAATCCTCCGTGTAGTTGCCGAGATAGCTCGAACAGTGGGCTCCACAGGGATGGCAGCAGGCCAGTTC CTCGACCTCAACGGCTCCTCTTCTTCCAACGCGGTCGAGTTCATCCAGGAGAAGAAATTCGGAGAGCTGGCCCAATGCTCCGCTGTCTGCGGAGGCCTGC TGGCTGGTGCTGAGGATGACGAGGTCGAGAGGCTAAGGAAGTATGGACGAGCTGTCGGGGTGCTGTATCAGGTGGTGGATGATGTTACGAAGGCCAAACG CGACGGAATTGCAGAAGGGAAGAGTTACGTTGGTGTTTATGGAGTTGAGAAGGCGATGGAGAAGGCCATGGAGCTTAGAGATGAGGCTAAGAAGGCATTG AGTGGGTTTGAGAAGTATGGTGATGCTGTTCTGCCGTTGTATAGCTTTGTGGATTATGCTGCTGATAAAGGGTTTAGTGTTGGGTGA
AA sequence Show only first row Show all	>Lus10025096 pacid=23167772 polypeptide=Lus10025096 locus=Lus10025096.g ID=Lus10025096.BGIv1.0 annot-version=v1.0 MASSAMLSLPLSLRSSPPVARMRLKLPIIRCSISSSSTQSKFDLQTYWASLREEINQKLDQAIPIRYPERIYEAMRYSTLAQGAKRAPPVMCVASCELFG LDRLAAFPTACALEMVHAASLIHDDLPSMDDAPSRRGQPSNHTVHGVDMAILAGDALFPLGFSHIVDNTPTDLVPETRILRVVAEIARTVGSTGMAAGQF LDLNGSSSSNAVEFIQEKKFGELAQCSAVCGGLLAGAEDDEVERLRKYGRAVGVLYQVVDDVTKAKRDGIAEGKSYVGVYGVEKAMEKAMELRDEAKKAL SGFEKYGDAVLPLYSFVDYAADKGFSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	0	1
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	1.0	0.9607
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	1.4	0.9503
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	4.6	0.9116
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	5.5	0.9167
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	6.3	0.9014
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	6.6	0.9184
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	7.2	0.8802
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	7.3	0.9022
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	7.3	0.9218
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	7.3	0.9118

Compare expression of checked genes

Lus10025096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.