Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35150 183 / 3e-57 O-methyltransferase family protein (.1) AT4G35160 178 / 5e-55 O-methyltransferase family protein (.1) AT5G54160 134 / 6e-38 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 133 / 9e-38 O-methyltransferase family protein (.1.2) AT1G77520 124 / 2e-34 O-methyltransferase family protein (.1) AT5G37170 119 / 2e-32 O-methyltransferase family protein (.1) AT1G33030 113 / 3e-30 O-methyltransferase family protein (.1) AT3G53140 110 / 5e-29 O-methyltransferase family protein (.1) AT1G62900 106 / 7e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G53810 107 / 7e-28 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023987 [exp] 268 / 3e-90 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10025098 [exp] 241 / 1e-79 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023986 [exp] 240 / 3e-79 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10013945 [exp] 139 / 5e-40 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10017699 [exp] 134 / 8e-38 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10008538 [exp] 133 / 1e-37 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10033656 [exp] 133 / 1e-37 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017695 [exp] 128 / 5e-37 AT4G35150 140 / 6e-40 O-methyltransferase family protein (.1) Lus10039744 [exp] 129 / 3e-36 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139800 [exp] 229 / 2e-75 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.009G139700 [exp] 227 / 2e-74 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 159 / 7e-48 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 159 / 7e-48 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 159 / 7e-48 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 153 / 2e-45 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 147 / 3e-43 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 146 / 8e-43 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 136 / 7e-39 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 133 / 9e-38 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10025097 pacid=23167777 polypeptide=Lus10025097 locus=Lus10025097.g ID=Lus10025097.BGIv1.0 annot-version=v1.0 ATGTCGAGTATGGCTAGATTGGCAGTAGATGCATTGGTCAAAGGCTGCCCCAACTTGCTAGATGGGTTCAAGACTTTGGTTGATGTTGGTGGTGGGAATG CGACGGCCACAAGGTTGTTGGTGCAAGGGTTTCCTTGGATTGAAGGGATCAACTTTGATCTCCCACATGTTGTCAAAGTGGCACCTGAAATTGAAAGTGT CAAGCATGTTGGTGGTGACATGTTTGAGTGTGTTCCAAGAGCAAATGCTGTCTTCATCATGAAAGTTCTACATGACTGGAACGACAAGGAGTGCACCGAG ATACTAAAGAGATGCAGAGAATCTACCAGTAACGACGGAAAGGTGATTATAGTGGAAGCTGTCGTGGACGAAGGTCAGATTGGAGAGGGAAATAAGCTCG AACATGTGAGGCTAACATTGGACATGATCATGATGGCTCACACAACCACATGCAATGAGAGGACTTTCAAAGAGTGGGAGTGTGTTCTTCATGGAGCAGG ATTTAGTAGAGTTGTTGTGACACCTATTAAGGCAGTTGAATCTGCCATTGAAGCCTTTCCCTAA
AA sequence Show only first row Show all	>Lus10025097 pacid=23167777 polypeptide=Lus10025097 locus=Lus10025097.g ID=Lus10025097.BGIv1.0 annot-version=v1.0 MSSMARLAVDALVKGCPNLLDGFKTLVDVGGGNATATRLLVQGFPWIEGINFDLPHVVKVAPEIESVKHVGGDMFECVPRANAVFIMKVLHDWNDKECTE ILKRCRESTSNDGKVIIVEAVVDEGQIGEGNKLEHVRLTLDMIMMAHTTTCNERTFKEWECVLHGAGFSRVVVTPIKAVESAIEAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10025097 [exp]	0	1

Compare expression of checked genes

Lus10025097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.