Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 326 / 5e-110 O-methyltransferase family protein (.1) AT4G35150 273 / 7e-90 O-methyltransferase family protein (.1) AT1G77520 166 / 6e-48 O-methyltransferase family protein (.1) AT5G54160 164 / 2e-47 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 161 / 2e-46 O-methyltransferase family protein (.1.2) AT3G53140 145 / 4e-40 O-methyltransferase family protein (.1) AT5G53810 144 / 2e-39 O-methyltransferase family protein (.1) AT1G63140 141 / 2e-38 O-methyltransferase family protein (.1.2) AT1G33030 139 / 6e-38 O-methyltransferase family protein (.1) AT1G77530 134 / 5e-36 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023986 [exp] 665 / 0 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10023987 [exp] 409 / 1e-142 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10025097 [exp] 219 / 1e-70 AT4G35150 183 / 2e-57 O-methyltransferase family protein (.1) Lus10033656 [exp] 216 / 4e-67 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 206 / 2e-63 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10015311 [exp] 192 / 5e-58 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10032304 [exp] 184 / 5e-55 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10039744 [exp] 180 / 2e-53 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10017691 [exp] 174 / 4e-51 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139700 [exp] 402 / 3e-140 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.009G139800 [exp] 381 / 2e-132 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 263 / 9e-86 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 232 / 9e-74 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 231 / 2e-73 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 231 / 2e-73 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 229 / 2e-72 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 214 / 1e-66 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 210 / 5e-65 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.004G050400 [exp] 204 / 1e-62 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10025098 pacid=23167868 polypeptide=Lus10025098 locus=Lus10025098.g ID=Lus10025098.BGIv1.0 annot-version=v1.0 ATGAGAGATCAGAAGCAAGAAGAGGAAGAGGCTGGAGTTGAGATATGGAGCTATGTGTTTGGCTTCACTAAGATGGCAGTTGTCAAATGCGCCATCGAGC TAGGCATAGCCGACGCAATCGACAACAATACCCCTATACCGCTTGGTCAGCTCTCATCCTCCCTAGGTTGCGACCCGCCATCCCTCTCTCGAATCATGCG GTTCCTAGTCCACCACCGCATTTTCGAAGAGAAGCCACTCAAAGAAGATCATGGCTCTGATACCACCGTGGGGTATGTCCACACCCCTCTCTCTCGTTTC CTAATCAGGCGACGTGAGAGGGGCAACAGTTCGAGCCTGGCGGACTATATTCTCTTCGAGAGCAACCATGTCATGCTGAAGCCATGGTTGTTCCTCAGCC CTCGAGTCCGGGCGGGAAGTGCCTGCCCGGCATTCGAACAGGTTCATGGGGAGGATGTGTGGGAATACGCTGAGGGGAACCCAGGGTTTAGCGGGTTTAT CGATGATGCGATGGCTTGTAATGCTAGGTTGGCCGTCCCGGCCATTGTTCGAGGTTGTTGCCCTAGCTTGTTTGACGGGGTCAAGACCTTAGTTGATGTT GGTGGTGGGAATGGAACAGCGTTAAGGTTGTTTGTTGAGGCTTGTCCTTCCATTCGAGGGATCAACTTTGATCTTCCACATGTTGTGGCCATGGCACCTC AAATTGAAGGTGTCACACATGTTGGTGGCGACATGTTCCAAAGTATCCCAAGAGCCGATGCTGCCTTCCTCATGCAAGTTCTGCACGACTGGAACGACGA GGATTGCATACGAATCCTAACGAAATGCAGAGAAGCGATCCCGGTGGAGGGGAAAGTGATAATCGCGGAGGCAGTGGTGGAAGAAGAGAAGAACGGGGAG CTTGAGTATGCAAGGCTAATGCTTGACATGGTGATGATGGCTCATACAAACAGTGGGAAAGAGAGGAACTTGAAGGAATGGGAATACATTCTTAACCAAG CCGGGTTTGGCCGGGTGACCGTGACTCGAATCAAAGCGGTCCAGTCCATCATTCAGGCTTTTCCTTGA
AA sequence Show only first row Show all	>Lus10025098 pacid=23167868 polypeptide=Lus10025098 locus=Lus10025098.g ID=Lus10025098.BGIv1.0 annot-version=v1.0 MRDQKQEEEEAGVEIWSYVFGFTKMAVVKCAIELGIADAIDNNTPIPLGQLSSSLGCDPPSLSRIMRFLVHHRIFEEKPLKEDHGSDTTVGYVHTPLSRF LIRRRERGNSSSLADYILFESNHVMLKPWLFLSPRVRAGSACPAFEQVHGEDVWEYAEGNPGFSGFIDDAMACNARLAVPAIVRGCCPSLFDGVKTLVDV GGGNGTALRLFVEACPSIRGINFDLPHVVAMAPQIEGVTHVGGDMFQSIPRADAAFLMQVLHDWNDEDCIRILTKCREAIPVEGKVIIAEAVVEEEKNGE LEYARLMLDMVMMAHTNSGKERNLKEWEYILNQAGFGRVTVTRIKAVQSIIQAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	0	1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	1.0	0.9310
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10041457 [exp]	2.0	0.9081
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	4.9	0.8980
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	5.5	0.8986
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	11.5	0.8731
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	12.3	0.9008
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	13.0	0.8719
AT2G27130			Bifunctional inhibitor/lipid-t...		Lus10026768 [exp]	14.9	0.8602
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10020035 [exp]	17.3	0.8739
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	18.2	0.9010

Compare expression of checked genes

Lus10025098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.