Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38440 1174 / 0 IYO MINIYO, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023985 [exp] 2876 / 0 AT4G38440 1209 / 0.0 MINIYO, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139900 [exp] 1585 / 0 AT4G38440 1222 / 0.0 MINIYO, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08621 [flax] [poplar] RPAP1_N RPAP1-like, N-terminal PF08620 [flax] [poplar] RPAP1_C RPAP1-like, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10025099 pacid=23167819 polypeptide=Lus10025099 locus=Lus10025099.g ID=Lus10025099.BGIv1.0 annot-version=v1.0 ATGGAGAAGACGGTGAAGACCCAAGTTCAGAGGACACGTGGCAAGAAAGCTGCAACCGCTTCAACGACTATGAAAAACTCAGGGGAGAAGAAACCGGGAG TTTTTGGAGCTAACACAGTGGAAATCGGAGGTGGCGTAGCAGCACCATCGTTCCTAATTGGTGGCATAGTCGAGAAAGGCATTTCAGAAACTACACCGAA CAAGCCGATTCGGCCTCCTAACCCCTCCGTTTTTCCCTTTCCCGTCGCCCGCCACCGTGCTCATGGACCGTACTGGAATGCTTTAACAAGCAAGAAGGAT GATAATGAAGCAGAAGAAGGGGACGGTGATAATGATCCTACTGATTTTAATCCTATATCAGCTTTTGCAAACCCGTTAGAGAGGAAGGAGAGGAAGGGTT TGGACCTTAGCCGTTGGAAAGAGGATGATAAGAGGCAACAGAATGGATTTAGTGGAAAGAGTAAGAAGGATGTCAAGGCTGTTGAAGATGTTAATAGTAG GAGCTCCTTTTCTGAGGTTCCTATGGAAGTGGATGAGACTCTTACTTCAGCAGCATACATGGGAACTGATAGCCTCCATGGATCCTATAATCGAAGGGAC CTTGGTGACGTTAGTTCTCATTCGCGGAAAGGAGAAACCGACTCTACGGAAGAACAGCTTATTAGAGTGAAGAAGATGAATCCTACGTTCTCAGGAGCTT CGAATGGAGTTTCTAGTTTTGGAGTTGCGCAAGGATCCATGTCACTTGAGAGTGAGATTGATGCCGAGAACCATGCACGGATACAGAATATGTCACAGGA AGAGATTGCAGAAGCGCGGGCCGAGTTAATAGAGAAGATGAATCCTTCGCTGCTGAACTTACTGAAAAGGCGAGGTCAGGAAAAGTTTAACAAGCAGAAT CTCTCTGAGTCGGATGTGCCTACAAAGAACGAACCCGCTAATGGTCCACCACACAAAGATTCCAGTGTGCATTCACATGTAGCAGATGGTGGAACTGATA CGGTGAAAACCCGTAACTCGATAAATGCAGACCCGGTTACACCTAACAGCGTGGAACATGATTTAGATCCTGCAAGCAGCAATTCATGGAATACTTGGAG TGAGAGAGTGGAGGCTGCTCGGAGATTAAGATTTTCTTTCGAGGGGGATGTCATCTCCGCAGATTTTAAGACTGGTTGCACGCCCAATGAAACTGGCAAT GCAATTGATAGTGTTGGTGAACGTGACTTTCTAAGAACTGAGGGGGATCCTGGAGCTGCTGGTTACTCTATTCAAGAAGCTGTGAAATTGACGAGAAGTG TGGTACCGGGACAACGAGGCCTTGCGTTGCATCTTCTCGCATCTGTTCTTGACAAAGCAATCCATAATATTAGATTAAAAGAGGTTGGAAATACTGTGAG AAACGCTGAGCAATCATACCAGTTCACTGATTGGGAGGCTGTTTGGGCTTATGCCCTTGGCCCTCAACCCGAACTTGTCTTGTCTTTAAGAATGTGTCTT GATGACAACCATAGTTCAGTGGTTCTAGCATGCACAAAGGTCATTCATTCTGTGCTGAGTTATGACTCGAATGAAAAGGTCTTTCAGATATCAGAGAAAT TAGGAACTTATGGCAAGGATCTCTACACAGCCCCCGTATTTCGAAGCAAACCAGATATTAATGGTGGCTTCCTTAGCGGTGGTTTCTGGAAGTATAGTGC CAAACCATCTAATATTCTAGCTTATGGCGAGGATGTTACGGATGACGACAATGAAGAGGAACCGACAATTCATGATGACATCGTTGTTGCTGGTCAAGAT TTTGCTGCAGGTTTGGTAAGAATGGGTATTCTTCCAAGGATGTCTTACCTTTTGGAGACCAATCCCACAGATGCTTTGGAAGAGTGTATATTGTCGATAC TCATTACAATAGCAAGGCATTCTCCAACATGTGCTACATCAATTATGAAGTGTGAAGGTCTTGTGAAGACGGTTGTTAAAAGGTTTAGAACGGACAACAA TATGGAAATTCGTCCTTCTGAGATCAAGTCCATTAGGCTTATGAAGGTCCTTGCTCAATCAGGGAAGGATAACTGTATGAAGTTCATAAAGGACGAGTCT TTTAATGGTATGACACAACACCTGTACTGGTATACCTCCTCCCTTGATGAATGGGTAAAGTCGGGGAAGGAGAGCTGCAGGCTTTCATCTGCGTTGAGGG TTGAGCAGCTGCAGTTTTGGAAGGTTTGCGTTCACTATGGATTTTGTATATCAGATTTTGCTGATATCTTTCCAGCCTTGTGTTTTTGGTTGACTCCACC TACTTTTGAGAAACTTGAGGAGAGAAATGTCGTTGGTGAATTTGCTTCCATTTCAAAGGAAGCATATCTTGTGTTGGAAGCTTTGGCTAGAAAGCTGCCA AACTTCTATATACAGAAGGGTCAGCACAGTAAAAAATCAGATGTTTTTATGGGGGAACATGAAACTTGGTCATGGAGTTATGTCACTCCAGTTGTTGAAT TAGCATTAAAGTGGATAAAGTGGAAAAGTGATCAACAAATATCTGAACTCTTCGAATCAGTGAGTGGACCACGGAGTGAGTCTGAAAACCAGGATTTATC TGTGACTTCGTTGCTATGGGTGTACTCTGCTGTCATGCAGTTGCTTTCAACTTTACTTCTCAAAGTAAAACCAGAGGATACCGTGACATCTGAAGAAAAT GGCTTGAATATTCCATGGCTTCCAGAGTTTGTTCCTAAGATTGGACTTGAAATCATAAGGAACGGGTTCTTGGGCTTTAGTGATGGCAATTCTGTAAAAG GAGATAATTTTGGAGTTGGTAGCTCACTTGTTTCGGAATTGTGTCGATTGAGAAAGACAAACAAACGCGAAGTATCGTTAGCTTCTGTTTCTTGTCTGAA TGCCATACTACTACTTGGACGTTCCGTTGATGAATTAATCCAATCAGCCAGGCGTGGGATTGATCAACCCACTTCACAAGGATACAGCTCCTCGGGTGAA GGCAAAGTACTCATGGAAGGAATACTGAAGCTATCTATGGCCGAGCTTAGATTTATGCTTGATATATTTACCAAGTTTTCCGCCCAAGAGTTTGAGCTTG TACAATCAATCGAGGTATTTGGTAGAGGAGGACCCGCCCCAGGAGTTGGACTCGGATGGGGTGCCTCCGGTGGAGGATTTTGGTCGTTGGACGTTTTGTT AGCTCAGGCTGACTCGAAATTGCTAGTCGACTTGCTCGATATCTTCCAGCAAGAATCTAGCACAGATTTGGTTACGGACAGAGAAATGGTTTCCACCGCT CACAGGATCAATTCTGTACTCAGAGTGTGCTTAACTGCTGGACCTAGAGATACAGATACAGCAGAGAAGGCTCTGGGTTTCTTACTCCAGCCACCTGTTC TTAATTATCTTGATGCATGTAGACAATGCTTATCGCAGTCGAACAATGAAGGAAGATCACCTTTACATCCACACACTGAGGAGGAGTATCAACTGTTTAG TAAGACACTAGCCTCTCATTTCCGAAGCAGATGGTTATCTGTGAAGACGAAATCAAAGCCTCTGGATGGGAATAAGTCATCTAGCAAATCTGAGAAGGCT ATGCCTTTAGAGACCATTCACGAGGAGGACATGTGCGTGTTATCGTCGAGGAATGTCACGAGGCATGACCAATGCTGCACGTATTTCACCACCGAATGGG CTCACCAGAGATTGCCTCTTCCAATGCATTGGTTTCTGAGTCCAGTCTCGGAGAAAAAGAACAGTGTCGATACCCTTGAAGTTATCAAGGCTGGACTCTT CTTTCTTCTTGGCATCGAAGCAATGTCTAGTCTCCTACCTAACGATGCCAAGTCTCCAATTCGCGATACACCTTTAGTTTGGAAACTGCATTCTTTATCA GTTGCATTACTGATTGGAATGGGCGTATTAGACGATGACAGAAGTAAAGAGGATTTCGAGGTTTTGCAGAACCTCTATGGCCGGGTTCTTGATGAAACCA GGTCAATCAACACCACTCGCGTGGAATTTTTGAGGTTCAAATCAGAGGTTCATGAAACTTACTCCACATTTCTGGAAGCTCTGGTGGACAAATTTGCTGC TGACTCTTATGGCGATCTGATTTTCGGTAGACAGCTTGCTATATTTTTGCATCGTTGCACCGAAACACCAGTCAGACTTGCTGCCTGGACTGTGCTCAGC ACCTCTCGTGTTCTTGAGCTTCTGCCTCCATTGGAGAAGTGTGTCGGTCAAGAAGATGGCTACCTTGAACCTATCGAGAACGATGAAGCTATTTTGGAAA GTTACGTGAAATCATGGATATCCGGTGCTCTAGACAGAGCTGCAACTAGGGGATCAATGGCATTCACACTTGCTCTACACCACCTTTCATCTTTCATTTT CGGTCCTCATCCCAACGAAAGAATAACTCTCCGAAACAAGCTCGCGAGATCACTCATTCGTGACTACTCGCAGAAACCAAACCACCAGGATATGATGTTG GAGCTGGTAAAATACAGCAAACCAAGTCTCGAAAACAACTGCCCGATTTCCAAACGTTTCGAAGTGCTCGCAGAAGCTTGCGATGGAAACTCTTCTCTAC TGTCTGAAGTTGAGAAACTGAAGTCTGCTTTTGCCTCTTAA
AA sequence Show only first row Show all	>Lus10025099 pacid=23167819 polypeptide=Lus10025099 locus=Lus10025099.g ID=Lus10025099.BGIv1.0 annot-version=v1.0 MEKTVKTQVQRTRGKKAATASTTMKNSGEKKPGVFGANTVEIGGGVAAPSFLIGGIVEKGISETTPNKPIRPPNPSVFPFPVARHRAHGPYWNALTSKKD DNEAEEGDGDNDPTDFNPISAFANPLERKERKGLDLSRWKEDDKRQQNGFSGKSKKDVKAVEDVNSRSSFSEVPMEVDETLTSAAYMGTDSLHGSYNRRD LGDVSSHSRKGETDSTEEQLIRVKKMNPTFSGASNGVSSFGVAQGSMSLESEIDAENHARIQNMSQEEIAEARAELIEKMNPSLLNLLKRRGQEKFNKQN LSESDVPTKNEPANGPPHKDSSVHSHVADGGTDTVKTRNSINADPVTPNSVEHDLDPASSNSWNTWSERVEAARRLRFSFEGDVISADFKTGCTPNETGN AIDSVGERDFLRTEGDPGAAGYSIQEAVKLTRSVVPGQRGLALHLLASVLDKAIHNIRLKEVGNTVRNAEQSYQFTDWEAVWAYALGPQPELVLSLRMCL DDNHSSVVLACTKVIHSVLSYDSNEKVFQISEKLGTYGKDLYTAPVFRSKPDINGGFLSGGFWKYSAKPSNILAYGEDVTDDDNEEEPTIHDDIVVAGQD FAAGLVRMGILPRMSYLLETNPTDALEECILSILITIARHSPTCATSIMKCEGLVKTVVKRFRTDNNMEIRPSEIKSIRLMKVLAQSGKDNCMKFIKDES FNGMTQHLYWYTSSLDEWVKSGKESCRLSSALRVEQLQFWKVCVHYGFCISDFADIFPALCFWLTPPTFEKLEERNVVGEFASISKEAYLVLEALARKLP NFYIQKGQHSKKSDVFMGEHETWSWSYVTPVVELALKWIKWKSDQQISELFESVSGPRSESENQDLSVTSLLWVYSAVMQLLSTLLLKVKPEDTVTSEEN GLNIPWLPEFVPKIGLEIIRNGFLGFSDGNSVKGDNFGVGSSLVSELCRLRKTNKREVSLASVSCLNAILLLGRSVDELIQSARRGIDQPTSQGYSSSGE GKVLMEGILKLSMAELRFMLDIFTKFSAQEFELVQSIEVFGRGGPAPGVGLGWGASGGGFWSLDVLLAQADSKLLVDLLDIFQQESSTDLVTDREMVSTA HRINSVLRVCLTAGPRDTDTAEKALGFLLQPPVLNYLDACRQCLSQSNNEGRSPLHPHTEEEYQLFSKTLASHFRSRWLSVKTKSKPLDGNKSSSKSEKA MPLETIHEEDMCVLSSRNVTRHDQCCTYFTTEWAHQRLPLPMHWFLSPVSEKKNSVDTLEVIKAGLFFLLGIEAMSSLLPNDAKSPIRDTPLVWKLHSLS VALLIGMGVLDDDRSKEDFEVLQNLYGRVLDETRSINTTRVEFLRFKSEVHETYSTFLEALVDKFAADSYGDLIFGRQLAIFLHRCTETPVRLAAWTVLS TSRVLELLPPLEKCVGQEDGYLEPIENDEAILESYVKSWISGALDRAATRGSMAFTLALHHLSSFIFGPHPNERITLRNKLARSLIRDYSQKPNHQDMML ELVKYSKPSLENNCPISKRFEVLAEACDGNSSLLSEVEKLKSAFAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	0	1
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	1.7	0.9281
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	6.2	0.9008
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	6.6	0.8915
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	9.0	0.8740
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	11.0	0.8891
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	11.3	0.9028
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	13.7	0.8560
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	15.7	0.8902
AT5G07940			unknown protein		Lus10021621 [exp]	15.7	0.8745
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	17.3	0.8812

Compare expression of checked genes

Lus10025099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.