Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 315 / 2e-104 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 211 / 8e-64 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 130 / 5e-34 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT1G65770 123 / 3e-31 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT5G60060 114 / 5e-28 Protein of unknown function (DUF295) (.1) AT3G25750 109 / 2e-26 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17690 106 / 4e-25 SDC SUPPRESSOR OF DRM1 DRM2 CMT3, F-box family protein with a domain of unknown function (DUF295) (.1) AT2G26160 101 / 9e-24 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 99 / 6e-23 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65740 99 / 2e-22 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023984 [exp] 806 / 0 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 214 / 4e-65 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10012519 [exp] 161 / 3e-46 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 144 / 1e-39 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 139 / 9e-37 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 122 / 2e-30 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10022650 [exp] 108 / 1e-26 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029350 [exp] 51 / 5e-07 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 511 / 0 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 504 / 2e-177 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 167 / 2e-47 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G014500 [exp] 157 / 1e-43 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105200 [exp] 154 / 2e-42 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 147 / 1e-39 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 138 / 2e-37 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 138 / 1e-36 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.004G134900 [exp] 72 / 1e-13 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 72 / 1e-13 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295) CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10025100 pacid=23167806 polypeptide=Lus10025100 locus=Lus10025100.g ID=Lus10025100.BGIv1.0 annot-version=v1.0 ATGGCGGACTGGTCTCAGATCCCTCGCGATCTCCTCGAAACAATCACGAAACGCATCGACACGTCCACCGACCTCCTCCGATTCCGCTCCGTATGCAGCA CATGGCGATCCTCCGTCGTCCCGAGGACCCGACGCTTATCCAGCGCGTTCCAAGTCCTCCCCAACGACGGCATCGCCAACACCTCCTTCGGCTTCTACCT CTCCAAGCGGATCGTTTACCTCATCGGACTCCCCAATTCGCCGCATCTCGGAAACTGGCTGGTTAAGATCGAGGAAGACGTCCCCGAGAGGAAGCGACTC GTCAATCCTCTCTCCAGGTGTCCTCTGAAATCCGAAGCTTTACCTAAGAATTTCCCTAGGATGTTGGATTTGAGGAACGTTATGGTGAAGGAGTTGGCAC AGGAGTATGTGCTGCATCACATTAGTTATAGGCCGAATGCTACTTCGTTCACCGATGCTGGGAATTTGTACATGGAGAAAGTGGTGATGATGTGGCTGGA GGATAAGCTGAATTCCAATACTGAATTCAGCGAATTTATGCTGCTGACGATCCATGTTTCGGGAAAGTTGGCGATTTTCAAGAGTGGGGATAGAAGATGG ACGATTATAGGTGAAATGGATTCACCTTACGACGATGTGGTTGTTCATAAGGGGAAGTTATTCGGTGTGGATAACACCGGCAAAGTTGTCAGCGTTGGTA AGGACGCCAATTTGACAGTAGCTGCTAACCCTGTGTTTGGTGGTGACAAGAAGTATTTAGTCCAGTCGAAAGGCGAATTGTTGTTGGTCGATATGTATCT GAGTATTGACACGGGGGATGATAATTCCGATACAGGGGAGGAGTTCATGGAGCATCTTGCTCAGTACATGAGGGAGAGGACGGTGAGGTTCAAAGTTTAT AAGTTGGATGAAGAAGATAAGACTTGGGTGGAAGTGGGAAGCTTGCCTGATACTGTGTTGTTCCTCGGGGATGATTCTGCATTTGCTGCATCGTCTTCGG ATCTCTATGGCTGCAACGGGAACTGTATATTTTTTGTGGATAACTTCTTTTACGCGAGGGAGATGGGTGGCCTAGGTAAGGAAGACGATGGAATGTGGGC TGCTCGAGATATAGGTGTGTTCGAGTTGGAAACGGGCTGTATAGGGCCATTGGTAAACTATCCTGAGTACTACAAGATTTTCTGGCCGCCTCCTGGATGG CTACTTACATCCCAAGAGGTATATGAACTTTTGAGAGATCGTTTCCAGTTTCTTCTTAATTTTATCTGCTGCCTTATCGTAACTAATGTTGCTCGAGTTT GA
AA sequence Show only first row Show all	>Lus10025100 pacid=23167806 polypeptide=Lus10025100 locus=Lus10025100.g ID=Lus10025100.BGIv1.0 annot-version=v1.0 MADWSQIPRDLLETITKRIDTSTDLLRFRSVCSTWRSSVVPRTRRLSSAFQVLPNDGIANTSFGFYLSKRIVYLIGLPNSPHLGNWLVKIEEDVPERKRL VNPLSRCPLKSEALPKNFPRMLDLRNVMVKELAQEYVLHHISYRPNATSFTDAGNLYMEKVVMMWLEDKLNSNTEFSEFMLLTIHVSGKLAIFKSGDRRW TIIGEMDSPYDDVVVHKGKLFGVDNTGKVVSVGKDANLTVAANPVFGGDKKYLVQSKGELLLVDMYLSIDTGDDNSDTGEEFMEHLAQYMRERTVRFKVY KLDEEDKTWVEVGSLPDTVLFLGDDSAFAASSSDLYGCNGNCIFFVDNFFYAREMGGLGKEDDGMWAARDIGVFELETGCIGPLVNYPEYYKIFWPPPGW LLTSQEVYELLRDRFQFLLNFICCLIVTNVARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	5.7	0.8080
AT1G69550			disease resistance protein (TI...		Lus10000945 [exp]	6.5	0.7550
AT1G24560			unknown protein		Lus10025844 [exp]	7.3	0.7216
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	10.2	0.6729
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	11.6	0.7910
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	13.9	0.7433
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	16.4	0.7688
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	19.2	0.7759
AT5G56240			unknown protein		Lus10008344 [exp]	21.7	0.7349
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	22.8	0.7391

Compare expression of checked genes

Lus10025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.