Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 655 / 0 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 498 / 2e-171 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 482 / 2e-164 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 434 / 3e-146 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 390 / 3e-130 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT4G13240 384 / 2e-127 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G01700 377 / 6e-125 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT3G24620 372 / 1e-122 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 368 / 3e-121 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT2G45890 364 / 3e-120 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023983 [exp] 1097 / 0 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 496 / 5e-171 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 492 / 3e-169 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10022601 [exp] 479 / 5e-162 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10021500 [exp] 478 / 2e-161 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10040248 [exp] 471 / 8e-160 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 463 / 6e-157 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 457 / 4e-155 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 444 / 6e-150 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140100 [exp] 784 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 764 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 577 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 573 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 496 / 2e-169 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 485 / 2e-165 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 481 / 3e-164 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 474 / 6e-160 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 401 / 1e-134 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 399 / 1e-133 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10025101 pacid=23167842 polypeptide=Lus10025101 locus=Lus10025101.g ID=Lus10025101.BGIv1.0 annot-version=v1.0 ATGGCGAGTTTGTCGTCCGACGATGAGCAGCAGAGCGGGAGGTGCGCCGGGAGCTACAGCTTGAGCGCCGGCGTCGGTGAGTGGGAGAGCTGCAGTAGCT TCTCCTGCCGCCGATTCGACGCCGAAGGAGCTTCCAGCTCCATGACTTCCTCTCCTCGCCCTGGCCTCCCCGGAGGCGGCAGCGGCTTCTGTTTCTCCGC GCCGCCACCTCCAATGTTGATGCTGCCAGTCGTCGGTCGCAAGGATCTGGTCTGGGACGGGAAATCTCAGAAGCGCGACGGCGATTTGTCCGAAGTTGAG ATGATGATGGAGAGATTTGCAAAGCTTCTTTTGGGGGAAGATATGTCTGGAAGTGGCAAAGGAGTCTGCACAGCACTAGCGATCTCCAACGCCATTACCA ATCTCTCTGCAACTGTGTTCGGGGAGCTATGGAGGTTAGAGCCACTGGCGACGCAGAAGAAGGCAATGTGGAGGAGAGAAATGGAGTGGCTGCTATGCGT TAGCGATTCCATAGTCGAGCTGGTGCCTTCTATTCAAAAGTTCCCCGGAGGAGGAACCTACGAGATCATGGCGAGTCGTCCCAGGTCTGACTTGTACATG AACTTGCCTGCGTTGAAGAAGCTTGATGCAATGTTGATAGGGATGCTTGATGGATTCTGTGAGACCGAGTTTTGGTATGTGGATCGAGGGATCATTGTGG CGGAGGATGAGGAGCTACGTCGTGATGTTTATCCCCCTGGTTTCTCCGGTGGTAGGCCTTCAATTCGGCAGGAAGAGAAATGGTGGCTGCCTTGTCCGAA AGTGCCACCAAATGGCTTGTCTGAGGACGCTAGGAAGAAGTTGCAGCAGTGTAGGGATTGTACTAATCAGATATTGAAGGCTGCCATGGCTATTAACAGT AGTGTGCTTGCCGAGATGGAAATACCTTCACCGTACCTAGAGGGCTTACCGAAGAGCGGGAGATCTTGTCTTGGCGATATCATCTATCGATTCGTAACAG CAGAACACTTCTCAGCAGAAGCTCTTCTCGACAATTTGGATCTGACAACAGAGCATCACGCCACAGAAATAGGTAACAAAATCGAGGCAGCATTGCACGT GTGGAAGCGCAAGGACCAGAAGAAGCAAAACAAAGGTCATTCAAAAGGTCATAAACATGCTTCATTCGCTGGAATTAGTTCCAAGGCTCGTATCCACGAT CATCGTCATTCCTTAGGTAGCAAGGTGAAAGGTCTCGTCGTTGCTAATGGCGAGAAAAAGCATGGCTTGGCTCAACGAGCTGAGATCCTTTTACACAGCT TGAGGCTTCGCTTTCCTGGCCTCCCTCAGACTGCCCTAGACATGAACAAGATTCAGTACAATAAGGATGTGGGACAGTCAATTCTTGAAAGTTACTCGAG AGTGATGGAGAGCTTGGCGTTCAACATCATGGCGAGGATCGACGATGTACTCTTCGTAGACGATGCAACGAAGCAATGTGTTGCCGAAGAATCCGCTTCC CTCTTCAACAGAGGCGTTCTTCCCATTCAGAAGCGGATGTCTCCTAGCCCGTTCTCGATCCAACACAGTCCATTCACATCTCCATTCGCGACGCCGACAT TCTGCTCTTCCACTCCACTAGCCGGAAGCCCCGAAAGGCTAGTCCCATTGTCAAAGAGAAGCAACCTACTCCTGGAGGTGTCTGACCGGAAATTAGGTTT TCCAGGAGAGTATGACAAGATCTGGTCTTACACTGGTAACCTAAGTGCACGAAGAGTTTCTTCTGGAGACGCCCTAGAGAGAAACTGA
AA sequence Show only first row Show all	>Lus10025101 pacid=23167842 polypeptide=Lus10025101 locus=Lus10025101.g ID=Lus10025101.BGIv1.0 annot-version=v1.0 MASLSSDDEQQSGRCAGSYSLSAGVGEWESCSSFSCRRFDAEGASSSMTSSPRPGLPGGGSGFCFSAPPPPMLMLPVVGRKDLVWDGKSQKRDGDLSEVE MMMERFAKLLLGEDMSGSGKGVCTALAISNAITNLSATVFGELWRLEPLATQKKAMWRREMEWLLCVSDSIVELVPSIQKFPGGGTYEIMASRPRSDLYM NLPALKKLDAMLIGMLDGFCETEFWYVDRGIIVAEDEELRRDVYPPGFSGGRPSIRQEEKWWLPCPKVPPNGLSEDARKKLQQCRDCTNQILKAAMAINS SVLAEMEIPSPYLEGLPKSGRSCLGDIIYRFVTAEHFSAEALLDNLDLTTEHHATEIGNKIEAALHVWKRKDQKKQNKGHSKGHKHASFAGISSKARIHD HRHSLGSKVKGLVVANGEKKHGLAQRAEILLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKQCVAEESAS LFNRGVLPIQKRMSPSPFSIQHSPFTSPFATPTFCSSTPLAGSPERLVPLSKRSNLLLEVSDRKLGFPGEYDKIWSYTGNLSARRVSSGDALERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	0	1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	1.4	0.8910
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	1.7	0.8810
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	2.0	0.8794
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	3.5	0.8779
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	3.7	0.8830
AT1G71110			unknown protein		Lus10035272 [exp]	5.7	0.8453
AT2G40070			unknown protein		Lus10040188 [exp]	6.5	0.8509
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	6.9	0.8732
AT1G73470			unknown protein		Lus10042285 [exp]	7.4	0.8781
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	8.3	0.8506

Compare expression of checked genes

Lus10025101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.