Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35030 238 / 1e-72 Protein kinase superfamily protein (.1.2.3) AT2G16750 240 / 7e-72 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 239 / 3e-70 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 234 / 7e-69 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 233 / 7e-68 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G18910 224 / 7e-67 Protein kinase superfamily protein (.1) AT3G05140 217 / 1e-64 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 217 / 1e-64 Protein kinase superfamily protein (.1) AT5G35960 215 / 2e-64 Protein kinase family protein (.1) AT2G28250 212 / 1e-61 NCRK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023981 [exp] 861 / 0 AT1G21590 233 / 2e-68 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 255 / 3e-76 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 254 / 5e-76 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 248 / 2e-74 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 244 / 4e-73 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 228 / 1e-66 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017273 [exp] 222 / 3e-65 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10039518 [exp] 223 / 5e-65 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 219 / 9e-65 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140300 [exp] 554 / 0 AT4G35030 245 / 9e-75 Protein kinase superfamily protein (.1.2.3) Potri.007G102400 [exp] 253 / 1e-75 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 245 / 9e-73 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 245 / 1e-72 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 242 / 2e-71 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 240 / 2e-71 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 236 / 6e-70 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 226 / 2e-65 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.007G011700 [exp] 218 / 5e-65 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.014G136300 [exp] 216 / 1e-64 AT5G35960 556 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025103 pacid=23167836 polypeptide=Lus10025103 locus=Lus10025103.g ID=Lus10025103.BGIv1.0 annot-version=v1.0 ATGCTGATGCGGGTTCTCCATACTTCTGCAAATCCGGGAGACAATGTGTTAGCTGTTCATATTCAAGAAGCATCTAGTAGTTTTGATCCAAACAGCTTCC ACATGCACGCAGATCTCTCTAAGTCCAAACAGGTGGATTTTCTAGTTAAAGTTTGTGCTGGAGAATCCTACATTTCAGGATTAAGTGACCAAGTCCGCAT CAACTCTGCCACAGTCCTCGTTCTTGGTTGCAGTCGTCAATGGCCTAAAGAGTCGGTTGTCAAAGCTCTCTTAAAAAGTCTTCCTCCAACCTGCAGGCTC CTCATAATGAATAGTGCTGGAAAAACAATATTTCAGAGCCAGGGAACCTCACAACAGGGATCCAATTCTCCAGTTCTTAAACCCTCTCTGTCTGATAATA GTTATTTCTACCAGCCAAAAGTTGGGTCCCCTCAGTTGCAGAAATCTTCAACAACACCATCTTCGTCGAAGAATACTACAGTTGACCAAAAGGTATTTGA GGTATCAGATAACCTGGCAAAGCAATTTCACAGGCTGATGCACTTACTAGCTACAGAGCCTATTAGACGTTTCACATGGGAAGATCTCAACTCTGCTACT AATGGTTTCATTCCTGAACTGTTGATCGGAAAAGGTGGCTATAGTAAGGTGTATCATGGAACTCTTGAGGATGGTCAGGCTGTAGCAATTAAAGTTCTGA AGAGTACAAACTTAGAGGATCTTCTCCGTGAGGTAGAGATTTTATCCGGGTTAAGGCATGAAAACATAGTTCCGATAATTGGTTGCTGCGATGGTAAGGG GATGCATGCTGTGGTCTACAATCTGTTGGAGGGTAGTCTGAAACGAAAATTTAAACATCTCAATTGGAATGAGAGAATGGGAGTTGCGATTGGAGTGGCA AAGGCACTTGAGTATCTTCATCATTCCTTTACCCCTCCAATAGTTCATAGAGACGTGAAGGCGTCCAATATCCTTCTTTCTGAGAACATGCATCCTCAAC TCTCAGATTTTGGATCAGCAATAAGGCTGGACAAGGTGGACCAGATCCCAGAAAACGTGAAGCCATTTGAAGTCGTAGGGACATTCGGCTACTTAGCCCC TGAGTATGTGATGTATGGAAAAGTCGATGTGAAAATAGATGTGTACTCTTATGGAGTTGTGCTCCTGGAACTTATCACAGGGAAAGAAGCTATTCAAACA AACCAGGAAAATAGTGAAAGCTTAGTATTGTGGGCAAGATCTCTGCTGAGTTCTGGTTTATGTGACCGTTTGATCGATCCTCACCTCAATGGAGATTACA ACAAAGAAGAAATGGAATTGCTAGTATTCCTTTCAAGGCTCTGCCTCGTACATTCATCTTCTCGGAGGCCATCAATGAAAATGATATTGCGATTGTTTGA AGATCCAGAATCCAGGAGGATAATGCTCAGAAAGAAGGTTGAATTCCTCGATGCGAGTAGTTCCAAAGTGGAAATGCAGTTTGATCCACTTGATGGTATG TCCACAAACGAAAACTTGTATAATCATATATTGTCAACTGAATTATTGGATTCGTAA
AA sequence Show only first row Show all	>Lus10025103 pacid=23167836 polypeptide=Lus10025103 locus=Lus10025103.g ID=Lus10025103.BGIv1.0 annot-version=v1.0 MLMRVLHTSANPGDNVLAVHIQEASSSFDPNSFHMHADLSKSKQVDFLVKVCAGESYISGLSDQVRINSATVLVLGCSRQWPKESVVKALLKSLPPTCRL LIMNSAGKTIFQSQGTSQQGSNSPVLKPSLSDNSYFYQPKVGSPQLQKSSTTPSSSKNTTVDQKVFEVSDNLAKQFHRLMHLLATEPIRRFTWEDLNSAT NGFIPELLIGKGGYSKVYHGTLEDGQAVAIKVLKSTNLEDLLREVEILSGLRHENIVPIIGCCDGKGMHAVVYNLLEGSLKRKFKHLNWNERMGVAIGVA KALEYLHHSFTPPIVHRDVKASNILLSENMHPQLSDFGSAIRLDKVDQIPENVKPFEVVGTFGYLAPEYVMYGKVDVKIDVYSYGVVLLELITGKEAIQT NQENSESLVLWARSLLSSGLCDRLIDPHLNGDYNKEEMELLVFLSRLCLVHSSSRRPSMKMILRLFEDPESRRIMLRKKVEFLDASSSKVEMQFDPLDGM STNENLYNHILSTELLDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16750			Protein kinase protein with ad...		Lus10025103 [exp]	0	1
					Lus10004148 [exp]	10.7	0.8171
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	11.7	0.7707
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	22.6	0.7769
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10026147 [exp]	34.2	0.8030
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	73.0	0.7827
					Lus10037041 [exp]	97.3	0.7739
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	101.4	0.7111
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	107.6	0.7617
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	146.4	0.7568
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	152.4	0.7174

Compare expression of checked genes

Lus10025103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.