Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 227 / 1e-71 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 218 / 5e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 204 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 202 / 1e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 199 / 3e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 198 / 3e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 195 / 3e-59 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G16370 195 / 4e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 194 / 5e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023979 [exp] 734 / 0 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 393 / 4e-136 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 391 / 2e-135 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 272 / 9e-89 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 269 / 1e-87 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10036966 [exp] 263 / 2e-85 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 254 / 7e-82 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 230 / 2e-72 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 221 / 7e-69 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 387 / 6e-134 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 300 / 1e-99 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 298 / 5e-99 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 224 / 2e-70 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 206 / 3e-63 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 204 / 1e-62 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G051000 [exp] 202 / 1e-61 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024800 [exp] 202 / 1e-61 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 201 / 2e-61 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024600 [exp] 200 / 5e-61 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10025105 pacid=23167863 polypeptide=Lus10025105 locus=Lus10025105.g ID=Lus10025105.BGIv1.0 annot-version=v1.0 ATGGAGAATACAAAGAAGGCCTTTGTACTGTTTCTTGCCGGCATTGCTGTGATGATGTTGATGAGCACAGCAGAAGCAGAAGTGCCTGCTGTGTTTGTGT TGGGAGACTCGACTGTTGATGTTGGAACCAACAATTTCTTGCCTGGAAGCATCGACAGGGCTGACTTCCCTCACAATGGCATTGACTTCCCTGCTTCCAA AGCCACCGGAAGGTTTGGCAATGGCCTAAACATTGCTGACTTCCTTGCTAAGCAGCTTGGACTTGAACTGAGTCCACCACCTTTCTTCATGCTTGGGAAC GGTACATCTCCTTTGAAGAACACCACTTTCAAAGGAGTGAACTTTGCCTCTGGGGGAGCTGGAATTCTTGACACCACTGGTTTGAGCCCGGATGGAGTAA AGCAAGTTGTCCCGTTGAGTGAGCAGGTTCAACAGCTGAGTTCCATCTCCTCTAGACTTGCCAGCTTCAAAGGTGCTGAAGCCGCAGCAGATTACCTCGC AACTTCAATGTTCATCATCAGCATCGGTAGCAATGACATCTTCCACTATTACCGCTTCAATAGCAGCTCTACGAAGGACCAGTTCCTGGCTAACCTAACA GCCACATATGAGCAACATTTGAGGACAATGATTGGGTTCGGAGTGAGGAAGATTGCGATCATTGCGGTCGGACCAATTGGGTGCTGCCCATCTCAGAGGA CTTTCAACCAGACGCTAGGCTGCTTGGGGGCGATGAATGGCATGGCAACTTCTTTCAACTCAAGACTACAATTCCTGATGAGCAAACTCAGTTCCGAGTA CGATGGGATGAAATACTCGGTCGGGGATGCTTATTCCATGACCATGTCTCTGATCAAGAACCCTGCATCATACGGATTCAAGGAGGTCAGTAGAGCATGT TGTGGGACAGGGACGCTGAATGCCGAATTCTTCTGTACACCGGACGCCAACGTTTGCTCGAACAGGGAAGAGACGCTGTTCTGGGACATGTTCCACCCAA CCCAGGCTGCATCAAAGCTTGCTGCTTCAACACTTTACAATGGCGGCAAGCCATTTGTGGCTCCGATCAACTTCAAGGAGTTGGCAAACGCCTTCTAA
AA sequence Show only first row Show all	>Lus10025105 pacid=23167863 polypeptide=Lus10025105 locus=Lus10025105.g ID=Lus10025105.BGIv1.0 annot-version=v1.0 MENTKKAFVLFLAGIAVMMLMSTAEAEVPAVFVLGDSTVDVGTNNFLPGSIDRADFPHNGIDFPASKATGRFGNGLNIADFLAKQLGLELSPPPFFMLGN GTSPLKNTTFKGVNFASGGAGILDTTGLSPDGVKQVVPLSEQVQQLSSISSRLASFKGAEAAADYLATSMFIISIGSNDIFHYYRFNSSSTKDQFLANLT ATYEQHLRTMIGFGVRKIAIIAVGPIGCCPSQRTFNQTLGCLGAMNGMATSFNSRLQFLMSKLSSEYDGMKYSVGDAYSMTMSLIKNPASYGFKEVSRAC CGTGTLNAEFFCTPDANVCSNREETLFWDMFHPTQAASKLAASTLYNGGKPFVAPINFKELANAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025105 [exp]	0	1
AT4G14615			unknown protein		Lus10021896 [exp]	2.4	0.7863
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	8.2	0.7871
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	17.5	0.6728
					Lus10014008 [exp]	22.2	0.7314
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	25.6	0.7517
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	33.8	0.7511
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	47.6	0.7171
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	61.9	0.6872
					Lus10007785 [exp]	72.3	0.6383
AT2G30530			unknown protein		Lus10034444 [exp]	72.8	0.6674

Compare expression of checked genes

Lus10025105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.