Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023972 [exp] 88 / 2e-22 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025106 pacid=23167807 polypeptide=Lus10025106 locus=Lus10025106.g ID=Lus10025106.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGCTTCATCATCATCAACATCAACACGACCAGGCAAAGGAGGCGGAGGAGGACACAGCTGTAGGTGGGTTGTGTGGACTGCTCATCAAGA AAGTTGGTCATCATGGACACCATGATGATCATGATCAGAAGCAGCAGCAGCAGATTCCAAGTGACCATCATCGTCATGATGTGCCTGAAACGACCAATAT CGAAGAACATCCTCCTCCTCATGGTCATCTTCATGATCAGGGGGAGGTCAAACATGGTGGAAATCCAAGCCTACAGCCTAATGTTGATCACCATGAGCTC CACCCTTCTCTTGTCAGCTCGTCGAGTGACGAAGAGGAAGGCGAAAAGAAGGAGAAGAAGAAAGCTGATGCAGGACTGAAGGAGATGATCAAGAACAAGC TGACTTCTGATCATCATCATGAAAAGGAACATGATCAAGCAGCTTCTGATTATCTGCGGAAGATAGAACTGAAGATGCTCGCCATGGATGACGCCTTATA A
AA sequence Show only first row Show all	>Lus10025106 pacid=23167807 polypeptide=Lus10025106 locus=Lus10025106.g ID=Lus10025106.BGIv1.0 annot-version=v1.0 MADQLHHHQHQHDQAKEAEEDTAVGGLCGLLIKKVGHHGHHDDHDQKQQQQIPSDHHRHDVPETTNIEEHPPPHGHLHDQGEVKHGGNPSLQPNVDHHEL HPSLVSSSSDEEEGEKKEKKKADAGLKEMIKNKLTSDHHHEKEHDQAASDYLRKIELKMLAMDDAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025106 [exp]	0	1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	1.0	0.8641
					Lus10004308 [exp]	8.4	0.8237
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	15.2	0.7935
AT4G33590			unknown protein		Lus10001351 [exp]	19.3	0.8159
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	22.8	0.8594
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	24.6	0.8516
AT1G50720			Stigma-specific Stig1 family p...		Lus10011117 [exp]	28.5	0.8297
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Lus10027201 [exp]	31.4	0.8369
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	32.6	0.8167
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	33.2	0.7826

Compare expression of checked genes

Lus10025106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.