Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 917 / 0 BGAL10 beta-galactosidase 10 (.1) AT4G36360 818 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 810 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 804 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G52840 713 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 712 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 703 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT2G32810 699 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G56870 697 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 681 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023977 [exp] 1384 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10022645 [exp] 1190 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 1174 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10023976 [exp] 894 / 0 AT5G63810 439 / 1e-147 beta-galactosidase 10 (.1) Lus10015625 [exp] 815 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 808 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025110 [exp] 806 / 0 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10037644 [exp] 802 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 792 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 1104 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 821 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 813 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 807 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 805 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 801 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 797 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.004G159800 [exp] 732 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 731 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 707 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10025108 pacid=23167830 polypeptide=Lus10025108 locus=Lus10025108.g ID=Lus10025108.BGIv1.0 annot-version=v1.0 ATGGGGAGGCTTTACTTCTTCATCACCTTCGTGCTCTTCTTCGAAATGGGTTTTTCCGGGAATGTGACTTACGATGGAAGGTCTTTAATTATCGACGGCC AGCGGAAGCTTCTCATATCTGCTGCCATTCATTACCCACGAAGCGTGCCCGAGCAGATGTGGCCGGGGCTAGTGCAGACTGCGAAGGAAGGAGGAGTTGA TGCGATTGACACATATGTGTTTTGGAATGGCCATGAAATAGCTCCTTCTGTTTACAACTTCGAGGGAAGATACGATCTGGTCAAGTTTGTAAAGATTGTT CAGGAGGCTGGATTGTACTTTATCCTTCGTATAGGCCCTTATATCGGAGCTGAATGGAATTATGGGGGTTTACCTGTTTGGTTACATAATATACCCGGGA CCGTCTTCCGATCTGATAACGAGAACTTTAAGGTGGAAAATGAATATGGATTTGTTCAGGAATTCTATGGAGATGGTGGGAAGCAATATGCCAAGTGGGC AGCTGCTATGGCTGTTGCTCAAAACACTGGTGTTCCTTGGATAATGTGCACACAGTTTGATGTCCCTGACCTGGTGATCAATACATGTAATTCTTTTTAC TGCGATGGCTTTAAACCTTTATCTCCGAACTGGCCTAAGCTTTGGACCGAGAATTGGTCTGGATGGTGTCAGACTTTTGGCTCCACTAATCCTCACCGGT CAACTGAAGATCTTGCTTTCTCTGTTGCTCGGTTCTTCCAGAAAGGCGGTAGCTTGAATAATTACTACATGGTAACATCCCAGACCTCTGTGGTCGAAAT GGTTCCCGAGGGCTTGAGGCCATCAGCGAAGTCGTTAGAGGATGACTCAAAGACTCTGAATTGGGAAGTGTTTGTGGAGAAAGCAGGCATTTGGGGCGAA GCTGATCTTGTCAAGAACAGCTTGGAGGATCACCTTAACATCACAAAAGATGCTAGTGACTATCTCTGCATTACTGTCGGTGACGATGAACAATTCTTAA AACAAGGACAGCCTCCAGTTCTCACGATTGCCTCAAAGGGTCATGCTCTCCATGTTTTTGTCAATGGGCAGCTTCAAGGTAGTGCATCTGGTAGTAGAGC ATCTAAGTATTTTGAATACAGGGAACCCATAACTCTGAAGGCAGGGAAGAACGAAATCTCTCTGCTGAGCATGACTGTTGGCCTAATCTGCTTTGGTCAT CTGTTTGAATGGGACCCTGCTGGACTCACCAGCGTCAAGATTGAGGGTTTCAACAACGGGACAATGGACTTATCCACTTTTGACTGGAGTTATAAGATTG GTATGCAAGGAGAAAATCTTGGTATACATTCACCAAGTGGTATGAACAGCGTGAACTGGACACCAAATCCAGTTGTGCCAAAAATGCAGCCTTTGACATG GTACAAGACCACTGTGGATCCACCGACCGGAGATGAGCCAATAGGACTTGATATGCTGAACATGGGGAAAGGTCTCGCTTGGTTGAATGGAGAAGAAATC GGCAGATACTGGCTCAGGGAAAGCCCTAAAGACGACAGATGTGCTGAAGAATGTGATTACAGAGGCGAGATCTTTTTGCAGTTTGATCCCGTGATCGAGT TTTTCCCCCAAAAATGCTATACAGGATGTGGGGAACCCACACAGAGATGGTATCATGTTCCCCGGTCATGGTTCAAGCCATCCGGAAACATTCTCGTGAT CTTCGAAGAGACAGGTGGTGACCCGACGGCGATCAAGTTCTCGAAACGAAGAACCTCTGGAGTGTGTGCTTCCGTCGGTGAGGATTACCCCATCAGTACC CTTTCTCTCAAGTGCCCTGAAGATGCCAACATATCGAGAGTAATATTCGCAAGCTTTGGAACTCCATTGGGGACCTGTGGATCATACAAGGTGGGGGATT GCCATCATCCCGACTCCACCTCTCTTGTTGAAAAGATGTGGCCGGGGCTGGTACAGACTGCGAAGGAAGGAGGAGTTGATACAATTGAAACATACGTATT CTGGAATGGTCATGAGATAGCTCCTTCCGTTTACAACTTCGAGGGCAGATATGATTTGGTCAAGTTTGTGAAGATTGTTCAGGAGGCTGGACTGTACTTA ATCCTTCGTATAGGCCCTGCTGTTGCAGCCGAATGGAATTATGGGGGTGTACCTGCTTGGTTACACTATATACCCGGGACTGTCTTCCGAACAGATAATG AGAGCTTTAAGAATCATATGCAGAGTTTCATGACTTACATTGTGAATCTTATGAAGCAAGAGAAACTTTTTGCGTCTCAGGGAGGTCCTATAATCTTGGC TCAGGCGAGTAAAACGATCACCCAGGAGACAGTGGAAAATGAATATGGATTTTATGAGCAATATTATGGAGAAGGTGGGAAGAAATATGCCATATGGGCA GCTAATATGGCTGTTGCTCAAAATACCGGTGTTCCTTGGATAATGTGCCAGCAATTTGATGCTCCTGACTCGGTGATCAATACTTGCAATGATTTTTACT GTGATGGATTTATACCTCTTTCTCCAAATAAACCCAAGATTTGGACCGAGAATTGGACTGGATGGTTTCAGTATTTCGGGGCCCCTAATCCTCATCGGCC AACTGAAGATCTTGCCTTTTCTGTTGCTCGGTTCTTCCAGAAAGGCGGCAGTGTAAATAATTACTACATGTATCATGGAGGAACGAATTTTGGCCGCACT GCTGGTGGACCATTCATTACGACCAGTTATGATTATGACGCCCCAATTGATGAGTACGGTTTACCTAGGCTTCAAAAATGGGGACACCTTAAAGAACTCC ACAAATCTATAAAATTATGTGAGAACGCATTGGCAACAAGCCAGCCAGACAGTATCTCCCTAGGACCTACTCAAGAGGTTGATGTTTTTGCTGATGCGTC AGGAGCATGTTGTGCGTTTCTAGCTAACTCTGATGCCCAAAATGATATGACCGTCACATTCCGAAATTCATCATACCACTTGCCGGCATGGTCAGTCAGT ATCTTATCGGACTGTAGGAATGAGATTTTTAACACGGCTAAGGTAACGTCTCAGGCCTCCGTGGTTGAAATGGTTCCTGAGGGCTTGAGGCCATCAATAA ATTTGTCGGAGATAGACTCAACAACTCTGAACTGGGAAGTGTTCGTGGAAAAAACAGGCATTTGGGGAGAAGCTGATTTTGTCAAAAACAGCTTGGAGGA TCACATTAATGCGACAAAAGATGCTAGTGACTATCTATGGTACACAACAAGGTTGGAATCCCTGATCCATCCACAATATGTAGCTTCTATTATTACTGTT GGTGATGATGAACAATTCTTAAAACAAGGACAACCTCCAGTTCTCACGATTGCCTCAAAGGGTCATGCTCTCCATGTTTATGTCAATGGGCAACTTCAAG GTAGCGCATTTGGCAATAGCGCATTTGCTTCTTTCGAATATAAGGCAACCATAACTCTGAAGGCAGGGAATAACGTAATCTCTCTGCTCAGCATGACTGT TGGCCTAACGTCTACTGGTCCACAGTACGAATGGACCCCAGCAGGACTCACTAGTGTCAAGATCGAGGGGCTCAACGGTGGGACAGTGGACTTATCCACT TACGAATGGACTTATAAGATTGGTTTGCAAGGAGAAAATCTTGCTATTCATTCACCAAGAGGTATGAACAGCGTGAACTGGACACCAACTCCAATTGTGC CAAAAATGCAGCCTTTGACATGGTACAAGACCACTGTGGATCCACCAACCGGAGACGAGCCCATAGGACTTGATATGCTCAATATGGGGAAGGGTCTTGC TTGGTTGAATGGAGAAGAAATTGGCAGATACTGGCTCAGGGAAATCGCTAAAGATGAAAGATGCACTGAAGAATGTGATTACAGGGGCAAGTTGGCTCTA ACAAGTGGTCCAATGGCCGAGTTCATGGTGCAAAAATGTTCTACAGGTTGTGGGGAACCCTCACAGAGATGGTACCACATTCCTCGATCATTGTTCAAGC CATCCGGAAACATCCTCCTGATCTTCGAGGAGATAGGCGGCGACCCGACATTGATAAAGTTCTCGAAACGAAGAATCTCCGGAGTGTGCGCTTCCATCGG CGAGGATTACCCCTCCGGAACTCTTCATCTACAGTGCCCTAAAGATGCCAACATATCGAGCGTGAAATTCTCCAGCTTCGGCACTCCAACTGGAACGTGT GGATCATACAAGGCAGGGGACTGCCACGATCCTAACTCCATTTTCACTGTCGAAAAGGAATGTTTGAACAGAAACGAATGCAGCATCCAAGTATCAGAAG AGAAGTTCAGCATGGGGAATTGCCGTGCAGATTCAACTGTGAGGAAAAGGCTTGCTGTGGAGGTAGTCTGCGGCAGCTCATGA
AA sequence Show only first row Show all	>Lus10025108 pacid=23167830 polypeptide=Lus10025108 locus=Lus10025108.g ID=Lus10025108.BGIv1.0 annot-version=v1.0 MGRLYFFITFVLFFEMGFSGNVTYDGRSLIIDGQRKLLISAAIHYPRSVPEQMWPGLVQTAKEGGVDAIDTYVFWNGHEIAPSVYNFEGRYDLVKFVKIV QEAGLYFILRIGPYIGAEWNYGGLPVWLHNIPGTVFRSDNENFKVENEYGFVQEFYGDGGKQYAKWAAAMAVAQNTGVPWIMCTQFDVPDLVINTCNSFY CDGFKPLSPNWPKLWTENWSGWCQTFGSTNPHRSTEDLAFSVARFFQKGGSLNNYYMVTSQTSVVEMVPEGLRPSAKSLEDDSKTLNWEVFVEKAGIWGE ADLVKNSLEDHLNITKDASDYLCITVGDDEQFLKQGQPPVLTIASKGHALHVFVNGQLQGSASGSRASKYFEYREPITLKAGKNEISLLSMTVGLICFGH LFEWDPAGLTSVKIEGFNNGTMDLSTFDWSYKIGMQGENLGIHSPSGMNSVNWTPNPVVPKMQPLTWYKTTVDPPTGDEPIGLDMLNMGKGLAWLNGEEI GRYWLRESPKDDRCAEECDYRGEIFLQFDPVIEFFPQKCYTGCGEPTQRWYHVPRSWFKPSGNILVIFEETGGDPTAIKFSKRRTSGVCASVGEDYPIST LSLKCPEDANISRVIFASFGTPLGTCGSYKVGDCHHPDSTSLVEKMWPGLVQTAKEGGVDTIETYVFWNGHEIAPSVYNFEGRYDLVKFVKIVQEAGLYL ILRIGPAVAAEWNYGGVPAWLHYIPGTVFRTDNESFKNHMQSFMTYIVNLMKQEKLFASQGGPIILAQASKTITQETVENEYGFYEQYYGEGGKKYAIWA ANMAVAQNTGVPWIMCQQFDAPDSVINTCNDFYCDGFIPLSPNKPKIWTENWTGWFQYFGAPNPHRPTEDLAFSVARFFQKGGSVNNYYMYHGGTNFGRT AGGPFITTSYDYDAPIDEYGLPRLQKWGHLKELHKSIKLCENALATSQPDSISLGPTQEVDVFADASGACCAFLANSDAQNDMTVTFRNSSYHLPAWSVS ILSDCRNEIFNTAKVTSQASVVEMVPEGLRPSINLSEIDSTTLNWEVFVEKTGIWGEADFVKNSLEDHINATKDASDYLWYTTRLESLIHPQYVASIITV GDDEQFLKQGQPPVLTIASKGHALHVYVNGQLQGSAFGNSAFASFEYKATITLKAGNNVISLLSMTVGLTSTGPQYEWTPAGLTSVKIEGLNGGTVDLST YEWTYKIGLQGENLAIHSPRGMNSVNWTPTPIVPKMQPLTWYKTTVDPPTGDEPIGLDMLNMGKGLAWLNGEEIGRYWLREIAKDERCTEECDYRGKLAL TSGPMAEFMVQKCSTGCGEPSQRWYHIPRSLFKPSGNILLIFEEIGGDPTLIKFSKRRISGVCASIGEDYPSGTLHLQCPKDANISSVKFSSFGTPTGTC GSYKAGDCHDPNSIFTVEKECLNRNECSIQVSEEKFSMGNCRADSTVRKRLAVEVVCGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	0	1
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	1.4	0.8602
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10025632 [exp]	6.5	0.7894
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	6.7	0.7963
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	9.9	0.7992
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	10.2	0.7842
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	10.3	0.8354
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	11.0	0.8263
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	14.5	0.8044
AT2G34190			Xanthine/uracil permease famil...		Lus10007289 [exp]	15.5	0.8221
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	18.3	0.8073

Compare expression of checked genes

Lus10025108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.