Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03820 736 / 0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023975 [exp] 998 / 0 AT2G03820 767 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G121500 [exp] 807 / 0 AT2G03820 710 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Potri.004G085700 [exp] 807 / 0 AT2G03820 694 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Potri.017G137500 [exp] 585 / 0 AT2G03820 464 / 2e-161 nonsense-mediated mRNA decay NMD3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04981 [flax] [poplar] NMD3 NMD3 family
Representative CDS sequence Show only first row Show all	>Lus10025109 pacid=23167846 polypeptide=Lus10025109 locus=Lus10025109.g ID=Lus10025109.BGIv1.0 annot-version=v1.0 ATGGCTGCCGAAGATGCAGGGATGTTCATGGTTCATCAGACCGTCGGTACAGTCCTGTGTTGCAAGTGCGGTATTCCGATGCAACCGAATGCCGCAAACA TGTGCGTGAGATGTCTTCGCTCCGAGATTGACATCACTGAAGGCTTGCAGAAGCATGTAATCATCATGTACTGTCCAGAGTGCGAGTGCTACTTGCAGCC TCCGAAGACATGGATCAAGGCGCAGTGGGAGTCAAAGGAGCTGCTGACTTTCTGCGTAAAGAGGCTGAAGAACTTAAATAAAGTGAGGCTGATCCACGCT GAGTTCGTCTGGACCGAGCCTCACTCCAAACGTATAAAAGTGAGGTTGAGAGTTCAGAAGGAGGTTCTCAACGGCGCGGTCCTGGAGCAAGCCTATGTCG TAGAGTATGTCCAGCAGGATCACATGTGCGAGGCTTGCTCGAGGGTGGCTGCCAACCCGGATCAGTGGGTTGCGTCTGTGCAGCTCCGTCAGCATGTTTC GCATCGAAGGACTTTCTTCTACTTGGAGCAGTTGATTCTGAAGCACGATGCTGCTTCTCGTGCTATCAAGATCAAGCAGATGGATCAAGGTATCGATTTC TTCTTTGGAAACCGTAGCCACGCTGTGAAATTCTTGGAGTTTTTGGGGAAAGTTGTTCCGGTGAGGAGTCGCAACGACAAGCAGCTTGTTTCTCACGATG TTAAGAGCAGCACCTACAATTACAAGTTCACTTTCTCCGTTGAGATCAGTCCAATTTGTCGCGAGGATCTGATCTGCCTTCCTCAGAGAGTTTCCGTAAG TTTGGGAAACCTCGGTCCTCTCGTGATATGCACCAAGGTGACGAATAACATTGCATTGCTGGATCCTTTCACTTTGAGGTACTGCTTTCTCGACTCGGAT CAGTATTGGAGGTACTCTTTCAAATCCCTGCTAACCAGCAGACAGCTGAGCGAGTACATTGTGTTAGATGTGGAAATCTCGAATCCTCCTGTGGAAGCAA GCATCGGTGGCACTAGCTATCTCATGGCTGACGTCCAGGTAGCTCGAGTATCCGATTTCGGCAGGAACGACAATATTTTCTATATAAAAACTCATCTCGG CCATCTTCTGAACCCTGGTGATCATGCACTTGGCTACGACCTTTATGCAGCTAATAGCAACGACAGTGAACTCGAGAAGTACAAAAACCTTGTTCTTCCC GATGTGATCTTGATGAAGAAGAGTTATGAAGAGGTGAGGCAGAGGAAACGTGGGAAGCCAAGGGCTTGGAAGCTCAAGTCGCTTAATATGGAAGTGGATG AGAGTACTAGAGGTAGAGTGGATCAAGAGAAGGTGCACTCAGAGTACGAAGAGTTCATCAGGGACTTGGAGGAGAACCCTGATCTTCGGTTCAACATATC GCTTTATCGGGACAAGGAATACCAGCCTTCGGAGATGGCCTCGGTTACTGACGGAGAAGAAGTGCCCACAGTTCCGTTGGAAGAGCTGCTTGCTGATCTT GAGTTGAATGATGGTTATCAAGGTGGAGAAGACGAAGAGGGCATGAGCGAATGA
AA sequence Show only first row Show all	>Lus10025109 pacid=23167846 polypeptide=Lus10025109 locus=Lus10025109.g ID=Lus10025109.BGIv1.0 annot-version=v1.0 MAAEDAGMFMVHQTVGTVLCCKCGIPMQPNAANMCVRCLRSEIDITEGLQKHVIIMYCPECECYLQPPKTWIKAQWESKELLTFCVKRLKNLNKVRLIHA EFVWTEPHSKRIKVRLRVQKEVLNGAVLEQAYVVEYVQQDHMCEACSRVAANPDQWVASVQLRQHVSHRRTFFYLEQLILKHDAASRAIKIKQMDQGIDF FFGNRSHAVKFLEFLGKVVPVRSRNDKQLVSHDVKSSTYNYKFTFSVEISPICREDLICLPQRVSVSLGNLGPLVICTKVTNNIALLDPFTLRYCFLDSD QYWRYSFKSLLTSRQLSEYIVLDVEISNPPVEASIGGTSYLMADVQVARVSDFGRNDNIFYIKTHLGHLLNPGDHALGYDLYAANSNDSELEKYKNLVLP DVILMKKSYEEVRQRKRGKPRAWKLKSLNMEVDESTRGRVDQEKVHSEYEEFIRDLEENPDLRFNISLYRDKEYQPSEMASVTDGEEVPTVPLEELLADL ELNDGYQGGEDEEGMSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	0	1
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	10.0	0.9063
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	16.8	0.9161
AT1G11925			Stigma-specific Stig1 family p...		Lus10012679 [exp]	17.2	0.9094
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	19.6	0.9177
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	26.6	0.8803
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	28.0	0.9130
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	30.9	0.9110
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	33.5	0.9132
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	36.3	0.8969
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	37.3	0.8858

Compare expression of checked genes

Lus10025109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.