Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 822 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G28470 670 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 661 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 645 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT3G52840 632 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 623 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 620 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 605 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G32810 605 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 555 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022645 [exp] 877 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 870 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 800 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10023977 [exp] 679 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025980 [exp] 658 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 652 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10015625 [exp] 639 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 626 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 624 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 905 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 660 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 655 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.005G232600 [exp] 654 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 654 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 649 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 647 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.004G159800 [exp] 632 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.017G057900 [exp] 600 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 599 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10025110 pacid=23167818 polypeptide=Lus10025110 locus=Lus10025110.g ID=Lus10025110.BGIv1.0 annot-version=v1.0 ATGCCACTGTGTTTCTTCTGCGTACTCTCATTCTTGCTTGTAACAACAGTCTTGTGTTTACCTAATGATGACGAGGTGAGTTATGACGGTCGGTCACTGC TCATCCACGGCCGTCGCCACCTCATAATCTCTGCTTCCATCCATTACCCTCGTAGCGATCCACAGATGTGGCCGGAGCTGGTCCGGACGGCGAAAGAAGG AGGAGCCAATGCCATTGAAACTTACGTGTTCTGGAATGGTCATGAGATTTCCCCTGATGTCGTGAGTAGTAGTAGTAGCATGGATGTTCCGTACAACTTT GCAGGAAGGTTTGATCTGGTCAAGTTTGTGAAGACAGTTCAAGAGGCTGGGATGTTCCTCATACTCCGCATTGGCCCCTTTGTTGCTGCCGAATGGAATT ACGGTGGCATACCGGTCTGGTTGCACTATATCCCAGGGACAGTCTTCAGAACAGACAACACTAACTTTAAGGTGGAGAATGAATATCAGTACTATGAACA GTTCTATGGAGTAGGGAAGAGATATGCTTACTGGGCTGCTAATATGGCTGTTTCTCAGCACACTGGTGTCCCTTGGATCATGTGTCAAGAGCCTGATGCT CCTGATCCTGTGATTGATACTTGCAACAGCTTTTACTGCGAGTCCTTTCAACCAACTTCACCAAACAAACCCAAGATTTGGACTGAGAACTGGACTGGAT GGTTTCAATCATACGGACAACCAATCCCACACAGGCCAGCACAAGATATCGCCTTTTCTGTAGCTCGATTCTTCCAGAAAGGCGGTAGTGTATTGAACTA TTACATGTATCATGGTGGAACGAACTTTGGTCGAACGGGAGGTGCTGGAATTACCACTAGTTATGACTACGATGCTCCAATTGATGAATATGGGTTGCGA AGGTTTCCGAAATGGGGGCACCTCAAGGAACTCCATGAAGCTATAAGAATGTGTGAGGATGTTGTGCTGAGCACCAAACCTGTCAACATCAATCTTGGTC CTTCCCAAGAGGCCGATGTCTACGCTGATGCATCATCGGGAGATTGTGTTGCATTCCTTGCCAACACGGATAACGAGACCGATGCAACCGTGGCGTTTAA GAATGTCTCATACCATCTACCTCCTTGGTCTGTCAGCATCCTTCCTGACTGCAAGAACGTTGTGTTCAATACTGCTAAGGTGAGTTATCAGTCTACTGTG GCTGAAATGATCCCTGAAGATTTGCAGCCATCACCAGAAACATGTGAAGGAGAAGAAGAAGGTATGGAGAAAGCAGAACCAAAGGAGATAAATTCTTCTC CTTTGAAGTGGCAAGTGTTTGAGGAGAAAGCTGGGATTTGGGGTGACGAAGCTGATCTTGTGAAGACAGAGTTAGTGGATCATATCAATACCACCAAAGA TGTAACTGATTACCTATGGTACACAACAAGCATTATTATTGATGAAATAGGAAGCAAACCAGTTCTTGTGATCCAATCCAAGGGTCACTATCTCCATGCA TTTGTCAATGGGAAACTTCAAGGCAGTGCATCTGGATATGAGCTTAGGATCCCTATATCTATCAGAAAAGGGAGGAATGACATTTCTCTGTTGAACACAG TAGTTGGATTACCAAGCGGGGGAGTGTTCTACGAATGGATAGGAGCTGGACCAACAAGTGTCAAGCTTGAAGGGTTGTTCAACAATGGCACTATTGGGTT GGAAGGAGAAAAGGATACCATATACAAACCGGAGACTAATCGCGACCAGAAATGGATTGTACCTTCAGAGGTGCCCAAAATGCAGCCTCTGACATGGTAT AAGGTGATTGTGGATGAGCCATCCGGGAATGATCCGATCGGGATGGACATGGTTGAGATGGGAAAGGGCTTTGCCTGGCTGAATGGACAAGAGATAGGAA GATACTGGCTTCAAACAAGTTCTGAATCTGACAAATGTGTTGCTGGTTTGCTTGGGGGTCAAGAATGTGATTATAGAGGCACTTTCTTTCAGGAGAAGTG CAGAACTGGCTGTGGAGACCCAACTCAAAGATGGTACCATATCCCACGATCATGGTTCAAGCCTTGTGGCAACGTTCTGGTGGTGTTTGAAGAGGAAGGA GGAGATCCAACCAAGATCAACTTCTCGAAACGCAGAATCTCTAGCGTATCGGCATGA
AA sequence Show only first row Show all	>Lus10025110 pacid=23167818 polypeptide=Lus10025110 locus=Lus10025110.g ID=Lus10025110.BGIv1.0 annot-version=v1.0 MPLCFFCVLSFLLVTTVLCLPNDDEVSYDGRSLLIHGRRHLIISASIHYPRSDPQMWPELVRTAKEGGANAIETYVFWNGHEISPDVVSSSSSMDVPYNF AGRFDLVKFVKTVQEAGMFLILRIGPFVAAEWNYGGIPVWLHYIPGTVFRTDNTNFKVENEYQYYEQFYGVGKRYAYWAANMAVSQHTGVPWIMCQEPDA PDPVIDTCNSFYCESFQPTSPNKPKIWTENWTGWFQSYGQPIPHRPAQDIAFSVARFFQKGGSVLNYYMYHGGTNFGRTGGAGITTSYDYDAPIDEYGLR RFPKWGHLKELHEAIRMCEDVVLSTKPVNINLGPSQEADVYADASSGDCVAFLANTDNETDATVAFKNVSYHLPPWSVSILPDCKNVVFNTAKVSYQSTV AEMIPEDLQPSPETCEGEEEGMEKAEPKEINSSPLKWQVFEEKAGIWGDEADLVKTELVDHINTTKDVTDYLWYTTSIIIDEIGSKPVLVIQSKGHYLHA FVNGKLQGSASGYELRIPISIRKGRNDISLLNTVVGLPSGGVFYEWIGAGPTSVKLEGLFNNGTIGLEGEKDTIYKPETNRDQKWIVPSEVPKMQPLTWY KVIVDEPSGNDPIGMDMVEMGKGFAWLNGQEIGRYWLQTSSESDKCVAGLLGGQECDYRGTFFQEKCRTGCGDPTQRWYHIPRSWFKPCGNVLVVFEEEG GDPTKINFSKRRISSVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025110 [exp]	0	1
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	1.7	0.8465
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	6.0	0.8162
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	8.0	0.7922
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	9.3	0.8046
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	14.3	0.7266
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	17.0	0.7401
					Lus10029254 [exp]	17.1	0.7571
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	20.3	0.7436
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	22.1	0.7486
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	23.1	0.7610

Compare expression of checked genes

Lus10025110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.