Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011217 [exp] 208 / 1e-63 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10018471 [exp] 189 / 1e-56 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038300 [exp] 67 / 2e-13 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.011G046900 [exp] 67 / 2e-13 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025112 pacid=23167888 polypeptide=Lus10025112 locus=Lus10025112.g ID=Lus10025112.BGIv1.0 annot-version=v1.0 ATGAACTCGGAGAACCAACGTTTGGCAATTAAGAGAACGGATCATACAGACGAAGATCTCGTCATTTCGCGAGCATTCGATGGATCGAGAAGTGGATTAG CTGATGTTCTATCTTCAAGTGAAAGCCTTTCATCATCCAGAGTGAAACCTGGAAAAGGAGGGGAAGATTGGTTTGTGGCCAATAATCATTCAGTGGCTAA CAATGAAGAAGCAATGTTCTCTGCAGATTACATTGTTGGAGTGGAAACCAATTCTGCAGCAAAAGCAGAGATGATTCCTCGAGGCAGATTGGTCGACGAT TCGTTCATGTTAAACAATGCTCGACCAGCTGCTGATCAGTACGACTCTTCTTGGAGAACAGACATAGCAATGGCTGCAGATATTTCGATGTCCTCTTCGT CTCCACTCGAAAATGGGAATGCCAAAGAGAAGAGTACTCACAGTTATGGAATCCTGGTCTACTACTGA
AA sequence Show only first row Show all	>Lus10025112 pacid=23167888 polypeptide=Lus10025112 locus=Lus10025112.g ID=Lus10025112.BGIv1.0 annot-version=v1.0 MNSENQRLAIKRTDHTDEDLVISRAFDGSRSGLADVLSSSESLSSSRVKPGKGGEDWFVANNHSVANNEEAMFSADYIVGVETNSAAKAEMIPRGRLVDD SFMLNNARPAADQYDSSWRTDIAMAADISMSSSSPLENGNAKEKSTHSYGILVYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	0	1
AT1G53200			unknown protein		Lus10005971 [exp]	2.6	0.8908
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	5.3	0.8860
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	6.7	0.8794
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	7.7	0.8566
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	8.5	0.8654
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	9.5	0.8645
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	9.8	0.8792
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	9.9	0.8696
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	10.0	0.8632
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020041 [exp]	10.7	0.8709

Compare expression of checked genes

Lus10025112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.