Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29430 90 / 2e-23 SAUR-like auxin-responsive protein family (.1) AT5G27780 87 / 3e-22 SAUR-like auxin-responsive protein family (.1) AT1G29450 84 / 5e-21 SAUR-like auxin-responsive protein family (.1) AT1G29420 83 / 7e-21 SAUR-like auxin-responsive protein family (.1) AT1G29460 81 / 4e-20 SAUR-like auxin-responsive protein family (.1) AT1G29440 81 / 4e-20 SAUR-like auxin-responsive protein family (.1) AT1G29510 81 / 5e-20 SAUR68 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) AT1G29500 80 / 1e-19 SAUR-like auxin-responsive protein family (.1) AT1G76190 74 / 2e-17 SAUR-like auxin-responsive protein family (.1) AT1G20470 67 / 1e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023969 [exp] 277 / 6e-97 AT5G27780 96 / 1e-25 SAUR-like auxin-responsive protein family (.1) Lus10025114 [exp] 73 / 7e-17 AT1G29450 99 / 4e-27 SAUR-like auxin-responsive protein family (.1) Lus10023970 [exp] 73 / 9e-17 AT1G29450 97 / 2e-26 SAUR-like auxin-responsive protein family (.1) Lus10003337 [exp] 68 / 1e-13 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10021825 [exp] 64 / 1e-13 AT1G76190 110 / 1e-32 SAUR-like auxin-responsive protein family (.1) Lus10034570 [exp] 62 / 4e-13 AT1G76190 122 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10007060 [exp] 60 / 5e-12 AT1G29430 71 / 2e-16 SAUR-like auxin-responsive protein family (.1) Lus10012181 [exp] 59 / 7e-12 AT4G34770 97 / 3e-27 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 60 / 8e-12 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043400 [exp] 103 / 9e-29 AT5G27780 141 / 8e-44 SAUR-like auxin-responsive protein family (.1) Potri.004G181400 [exp] 103 / 1e-28 AT1G29450 132 / 4e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G141201 [exp] 100 / 3e-27 AT5G27780 132 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G140900 [exp] 99 / 6e-27 AT1G29510 139 / 3e-43 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.017G043500 [exp] 97 / 2e-26 AT5G27780 120 / 1e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G141150 [exp] 93 / 1e-24 AT1G29450 131 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G141000 [exp] 87 / 2e-22 AT1G29500 122 / 2e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G141251 [exp] 86 / 3e-22 AT1G29430 93 / 7e-25 SAUR-like auxin-responsive protein family (.1) Potri.002G064300 [exp] 84 / 2e-21 AT1G29510 109 / 2e-31 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.009G141100 [exp] 77 / 9e-19 AT1G29510 117 / 8e-35 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10025115 pacid=23167756 polypeptide=Lus10025115 locus=Lus10025115.g ID=Lus10025115.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAGTGGCAGAGGATTGCAGCAGCAAGCAAGACAGGAGGAAGGATCAGGATCACACTCCCCAAGCTCAAACTCATCCACATCATTGCCAATG GCGATAGTAGCGATGATGAATTCGAAGTGAAGAAAGGGCATTTCGCAGTGTACACAGCCGTCGAGGAAAGGAAGAGGTTTGTGGTTCCACTGGAGTTCCT CAACGTCACAATCTTCATGCACCTCCTCAAACTGTCCGAAGAACAGCTGGGATTGCCTAGCGACGGACCGATCACTCTGCCTTGCGACCCAAGCTTCCTC GAGTACCTAATCGGGTTGGTTCAGAACCAGAGGTACTCCATTCCTGAAGACCTGGAGAAGACTCTGCTCAGTGTCTCCACGGGGATGACTGCTGCTCTGC ATTCTTCTTCTTCTGGTGGCGGGTTGGAGATGGTTGAGATGATGAACCACCATCCAAATGTCATCTACGGGTTCTAA
AA sequence Show only first row Show all	>Lus10025115 pacid=23167756 polypeptide=Lus10025115 locus=Lus10025115.g ID=Lus10025115.BGIv1.0 annot-version=v1.0 MAKKWQRIAAASKTGGRIRITLPKLKLIHIIANGDSSDDEFEVKKGHFAVYTAVEERKRFVVPLEFLNVTIFMHLLKLSEEQLGLPSDGPITLPCDPSFL EYLIGLVQNQRYSIPEDLEKTLLSVSTGMTAALHSSSSGGGLEMVEMMNHHPNVIYGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	0	1
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	1.4	0.9640
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	3.2	0.9636
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	4.2	0.9565
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	5.3	0.9440
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009001 [exp]	8.5	0.9409
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	18.6	0.9348
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	18.7	0.9349
AT4G34770			SAUR-like auxin-responsive pro...		Lus10016917 [exp]	22.1	0.9149
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	23.0	0.9264
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	23.4	0.8588

Compare expression of checked genes

Lus10025115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.