Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45970 188 / 1e-60 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G38400 187 / 2e-60 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 183 / 1e-59 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G17030 92 / 2e-23 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT1G65680 53 / 6e-09 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 49 / 3e-07 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 43 / 2e-05 EXPB6 beta expansin 6 (.1) AT5G02260 40 / 0.0002 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023968 [exp] 310 / 1e-108 AT3G45970 301 / 4e-103 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 252 / 8e-86 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10003336 [exp] 251 / 3e-85 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10001009 [exp] 104 / 4e-28 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 101 / 5e-27 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 97 / 2e-25 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10040148 [exp] 92 / 2e-24 AT4G17030 137 / 7e-41 expansin-like B1 (.1) Lus10030931 [exp] 91 / 1e-22 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10011012 [exp] 89 / 3e-22 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141400 [exp] 229 / 8e-77 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 222 / 5e-74 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.003G083200 [exp] 108 / 1e-29 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 104 / 4e-28 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.001G147200 [exp] 89 / 4e-22 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G087000 [exp] 88 / 8e-22 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.014G066300 [exp] 49 / 2e-07 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 42 / 4e-05 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 41 / 0.0001 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.001G001100 [exp] 39 / 0.0006 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025116 pacid=23167841 polypeptide=Lus10025116 locus=Lus10025116.g ID=Lus10025116.BGIv1.0 annot-version=v1.0 ATGGCGTTGGCCAACCCTGGCAAGGCACAGAGCATCTTGGAACTTGGTACTGCAGATGTCGAATACAAACGGGTGCCATGTGATTTGAAGGCCCAGAACC TGGCGGTTAGAGTGGAGGAATCGAGCAGAAAACCGAACCATTTGGTGGTCAAGGTGTTGTACCAAGGTGGGCAAACCGAGATTGTGGGGATAGACGTGGC CAGAATCGGTTCGTCCAACTGGGCTTTCTTGAGTAGGAACCATGGGGCCGTGTGGGAGATGGACCGTGTTCCTGAAGGCCCGCTGCATTTCAGGTTTATG GTGACGGGCGGGTTCGATGGGAGATGGGTTTGGACCGAGAAGGCGGTTCTGCCCGGAGATTGGAAAGTCGGGGTGGTTTACAACACCGGGCTTCAGATTA GCGACATTGCGCAGGAGCCTTGCTCGCCCTGCGACGATTCGACCTGGAAATGA
AA sequence Show only first row Show all	>Lus10025116 pacid=23167841 polypeptide=Lus10025116 locus=Lus10025116.g ID=Lus10025116.BGIv1.0 annot-version=v1.0 MALANPGKAQSILELGTADVEYKRVPCDLKAQNLAVRVEESSRKPNHLVVKVLYQGGQTEIVGIDVARIGSSNWAFLSRNHGAVWEMDRVPEGPLHFRFM VTGGFDGRWVWTEKAVLPGDWKVGVVYNTGLQISDIAQEPCSPCDDSTWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	0	1
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	2.2	0.9590
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	2.4	0.9574
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	4.2	0.9014
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	5.7	0.9466
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	6.7	0.9291
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	6.9	0.9434
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	8.1	0.9367
					Lus10040587 [exp]	9.4	0.9306
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	11.0	0.8901
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10002204 [exp]	11.4	0.7969

Compare expression of checked genes

Lus10025116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.