Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35190 374 / 5e-133 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G37210 326 / 3e-114 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT5G06300 321 / 3e-112 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT3G53450 321 / 4e-112 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G28305 320 / 6e-112 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G35990 294 / 2e-101 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 273 / 2e-93 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 254 / 1e-85 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 153 / 5e-47 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 43 / 8e-05 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023967 [exp] 421 / 4e-151 AT4G35190 358 / 1e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 378 / 3e-134 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 377 / 4e-134 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 332 / 2e-116 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 330 / 1e-115 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 326 / 5e-114 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 320 / 7e-112 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 308 / 5e-107 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 308 / 8e-107 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181800 [exp] 394 / 7e-141 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G141500 [exp] 387 / 4e-138 AT4G35190 357 / 2e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 376 / 6e-134 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.005G248900 [exp] 369 / 3e-131 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 332 / 2e-116 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 330 / 2e-115 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.004G212200 [exp] 322 / 2e-112 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.009G010800 [exp] 321 / 2e-112 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 311 / 2e-108 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 304 / 2e-105 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10025117 pacid=23167877 polypeptide=Lus10025117 locus=Lus10025117.g ID=Lus10025117.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCAGTTGCAAAAACTTTCAGTGATACTAGCAACAATGAAGGAGGAGGAGGAGGAGGAGGAGTGATGAAATCAAAGTTCAAGAGGGTATGTG TTTTCTGCGGGAGTAGCACAGGGAAGAAGAACTGCTACAGAGATGCTGCCGTTGATCTTGCTCAGGAGCTGGTAGGGAAAAGATTGGATCTTGTGTATGG CGGAGGGAGTATTGGGCTGATGGGTTTGGTCTCTCAAGCTGTCCATCGCGGTGGAGGCAATGTTCTTGGGATCATACCCAGAACCTTGATGAGCAAAGAG ATTACTGGTGAAACAGTTGGTGAGGTGAAGGCTGTAGCCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCGTTCTGATTGTTTCATTGCCCTACCAG GTGGATATGGGACATTGGAGGAGCTGTTGGAAGTCATCACTTGGGCTCAACTAGGAATCCACGACAAGCCTGTGGGTTTGCTGAATGTTGATGGATACTA CAACTACCTCCTGACATTCATTGACAAAGCTGTGGATGATGGGTTCATCAAGCCATCCCAGCGTAACATCTTTGTCTCCGCACCAAACGCCAAAGAACTT GTTCAGAAGCTTGAGGAGTACGTGCCTGTGAATGATGGAGTCATTGTTAAGGCAATGTGGGAAGTTGAGCAGCAGCAACAACAGATGGGTGGGATCAATG CTGCTCCTACCACTTTGCAGACCGAGGTAGCTCTATGA
AA sequence Show only first row Show all	>Lus10025117 pacid=23167877 polypeptide=Lus10025117 locus=Lus10025117.g ID=Lus10025117.BGIv1.0 annot-version=v1.0 MEAAVAKTFSDTSNNEGGGGGGGVMKSKFKRVCVFCGSSTGKKNCYRDAAVDLAQELVGKRLDLVYGGGSIGLMGLVSQAVHRGGGNVLGIIPRTLMSKE ITGETVGEVKAVADMHQRKAEMARRSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKEL VQKLEEYVPVNDGVIVKAMWEVEQQQQQMGGINAAPTTLQTEVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10025117 [exp]	0	1
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	9.5	0.7455
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	12.2	0.8020
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	15.1	0.7595
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	19.0	0.7573
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	20.2	0.7828
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	27.1	0.7295
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	29.0	0.6992
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	35.8	0.7585
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	39.1	0.7503
AT5G40460			unknown protein		Lus10022268 [exp]	51.4	0.6837

Compare expression of checked genes

Lus10025117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.