Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17040 249 / 8e-82 NAC ANAC036 NAC domain containing protein 36 (.1) AT2G02450 182 / 1e-54 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT5G39820 169 / 4e-50 NAC ANAC094 NAC domain containing protein 94 (.1) AT4G27410 161 / 2e-47 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G26870 164 / 3e-47 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 154 / 8e-45 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT2G43000 152 / 4e-44 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT5G08790 152 / 6e-44 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 152 / 1e-43 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 151 / 3e-43 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023966 [exp] 507 / 0 AT2G17040 268 / 3e-89 NAC domain containing protein 36 (.1) Lus10022636 [exp] 313 / 2e-106 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10003333 [exp] 291 / 4e-98 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1) Lus10008420 [exp] 177 / 1e-52 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008419 [exp] 178 / 4e-52 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 177 / 2e-51 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 172 / 6e-51 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008897 [exp] 171 / 7e-51 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10030478 [exp] 169 / 4e-49 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141600 [exp] 253 / 3e-83 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.005G103200 [exp] 204 / 1e-64 AT2G17040 249 / 6e-83 NAC domain containing protein 36 (.1) Potri.003G046700 [exp] 181 / 8e-54 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G230800 [exp] 170 / 5e-50 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.017G082000 [exp] 168 / 5e-49 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 161 / 2e-46 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.010G166200 [exp] 158 / 3e-46 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.001G404100 [exp] 157 / 4e-45 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.008G089000 [exp] 155 / 4e-45 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.004G038000 [exp] 156 / 6e-45 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10025118 pacid=23167800 polypeptide=Lus10025118 locus=Lus10025118.g ID=Lus10025118.BGIv1.0 annot-version=v1.0 ATGGATGACATCACTAATGAATTGAGCTCACACCACAAGTTCGGCCTGCCCGGGTTTCGATTCCACCCGACAGAGGAGGAGCTCGTCGACTTCTACCTTA AGAACATGGTCTTCGGCAATAAGCTCAGTCTCGATGTCATGAAATACCTCAACATCTACCTCTACGATCCCAACGACCTTCCTAGGATGGCAAAGATAGA TGGGGAAAGGGAGTGGTACTTCTTTGTACCGAGGGAGAGGAAGAACGGGAGCAGGCCGAACCGGGTAACCGAGAAAGGGTTTTGGAAAGCAACTGGTTCG GACCGGAAGATATGGAGGATGTCTGAGTCTGATGCAAAGAGGCAGCATATTGGGGTGAGGAAGACTCTGGTTTTCTACAAAGGCAGAGCTCCTAGAGGCA CCAAAACCGATTGGGTCATGAACGAGTATCGCCTCCCTCATTCTTCCACAATTCATAAGGACATAGTCTTATGCAAGATATACAGGAAGGCAACTTCTAT GAGAGTTCTGGAGCAGAGGGCATTCCAGGAAGAACATCAGCAGACATTCATGAACAACACCACTGCTTCATCCTCTTCATTGGAGACCAACATGTCCATG TCATCATTCTTTTCCAATCCACATCAGCAAGAGGGGAACCCAGTAGTACTTCATCAAACACCTGGAGCAGCTGAGATGAAGATAGAAGCTGATGACCCTT TTACAGACAACAATATTCAGACTGCTCATTATGACGGTTATGAATATGATTATGGTGGTGGCTTCAATACGGTGCCATCTTGTTCATTGCAGCAGCAGTT CATCCCAGGAGAAGGAAAGCTGCAGCCTCTCAAGTTGCCTGAACTTCAAGTGCCTATGTTTAGCATGGATTTGAGTCAGCTGGATGCTTTTTGGTTGACT AGCCCTTGGCTTAATCAGAACTTGACCCCTTTGGCTAATTTGTTGAACTTTTAG
AA sequence Show only first row Show all	>Lus10025118 pacid=23167800 polypeptide=Lus10025118 locus=Lus10025118.g ID=Lus10025118.BGIv1.0 annot-version=v1.0 MDDITNELSSHHKFGLPGFRFHPTEEELVDFYLKNMVFGNKLSLDVMKYLNIYLYDPNDLPRMAKIDGEREWYFFVPRERKNGSRPNRVTEKGFWKATGS DRKIWRMSESDAKRQHIGVRKTLVFYKGRAPRGTKTDWVMNEYRLPHSSTIHKDIVLCKIYRKATSMRVLEQRAFQEEHQQTFMNNTTASSSSLETNMSM SSFFSNPHQQEGNPVVLHQTPGAAEMKIEADDPFTDNNIQTAHYDGYEYDYGGGFNTVPSCSLQQQFIPGEGKLQPLKLPELQVPMFSMDLSQLDAFWLT SPWLNQNLTPLANLLNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	1.0	0.8991
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	4.2	0.8955
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	9.2	0.8517
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	9.8	0.8676
AT1G10380			Putative membrane lipoprotein ...		Lus10037236 [exp]	10.5	0.8736
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	11.5	0.8447
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	11.8	0.8451
AT1G23070			Protein of unknown function (D...		Lus10035832 [exp]	14.0	0.7653
AT3G13130			unknown protein		Lus10006387 [exp]	14.0	0.8407
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	17.3	0.8283

Compare expression of checked genes

Lus10025118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.