Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 181 / 5e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 179 / 2e-55 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 175 / 4e-54 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 168 / 3e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 115 / 1e-30 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 101 / 3e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 87 / 6e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 80 / 8e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 69 / 1e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 65 / 4e-12 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014447 [exp] 446 / 1e-160 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 399 / 5e-142 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 388 / 1e-137 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 380 / 2e-134 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 373 / 7e-132 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 373 / 1e-131 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 369 / 2e-130 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 365 / 1e-128 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 364 / 4e-128 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 208 / 4e-66 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 198 / 1e-62 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 193 / 1e-60 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 193 / 1e-60 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 181 / 9e-56 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 178 / 8e-55 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 177 / 3e-54 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 173 / 1e-52 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 150 / 4e-44 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 147 / 7e-43 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10025119 pacid=23167882 polypeptide=Lus10025119 locus=Lus10025119.g ID=Lus10025119.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGCTCCAACAGTTTCCCTTCAACATCACACCCTCTAGTTTCAGAGTTTGACGAGCAACTTTGCAGGTTGAGACAAT CTCAAGCTGCTTCCACTTCATTATCATCGATAAGCCACAAACTTAATGGCCTTCAGGATGTGTATTACTGTGTTGACAAGTTGATTCAACTTCCATCAAC TCAACAGGACATGATCCATGACCAAAATGAGCTACTAGATGGATCTCTGAGGCTTTTGGATATGTGCAACACAGCCAAGGATGCCTTGTCTCAAATGAAA GAGTCCGTTGCTGGACTTCAATCTGCCATTCGTAGAAGGCAAGGAGATCTGGTAGCAGAAACCAAGAGGTACCTCAATGCAAGGAAGATTGTGAAGAAAG CAATTCAAAAGTCCTTGAAGGGTAATGAAAACAAGAAATCCACCTCATCCAACAATGGTGATGCAATCGACATGTTAAGAGAAGCTGAATCCATTGTTCT TGAGGTGTTGGAGAACTTGTTGTGTTTCATTTGCCAATCAAACTCCAAGTCCAGCAGCTGGTCATTGGTTTCCAAGCTGATTGCATCCAAGAAGACTCAA GTTTCTGAAAACTCAAATGAATTTGCTGAAGTCGATGACTGTTTGAAGACGAGCAAATCCAGTGAGGAAATCCAAGCTCAACTGAAAAACTTGCAGCCAT GCATTCAAGATCTTGAAGAAGGAGTTGAGTCACTCTTTAGGTGTCTCATCAAAACAAGAGCATCCATTCTCAATGTTCACAATCTGTAA
AA sequence Show only first row Show all	>Lus10025119 pacid=23167882 polypeptide=Lus10025119 locus=Lus10025119.g ID=Lus10025119.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSTSHPLVSEFDEQLCRLRQSQAASTSLSSISHKLNGLQDVYYCVDKLIQLPSTQQDMIHDQNELLDGSLRLLDMCNTAKDALSQMK ESVAGLQSAIRRRQGDLVAETKRYLNARKIVKKAIQKSLKGNENKKSTSSNNGDAIDMLREAESIVLEVLENLLCFICQSNSKSSSWSLVSKLIASKKTQ VSENSNEFAEVDDCLKTSKSSEEIQAQLKNLQPCIQDLEEGVESLFRCLIKTRASILNVHNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	1.0	0.9698
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	1.7	0.9593
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	2.2	0.9451
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	2.8	0.9407
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	3.5	0.9615
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	6.2	0.9255
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	6.6	0.9515
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	6.9	0.9434
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10014332 [exp]	8.1	0.9161
AT2G17080			Arabidopsis protein of unknown...		Lus10014450 [exp]	10.6	0.9423

Compare expression of checked genes

Lus10025119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.