Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 133 / 8e-39 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 130 / 2e-37 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 128 / 6e-37 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 123 / 9e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 70 / 2e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 69 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 69 / 4e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 62 / 1e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 58 / 5e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 56 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023951 [exp] 271 / 9e-93 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 269 / 5e-92 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 269 / 8e-92 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 261 / 5e-89 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 257 / 2e-87 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 257 / 3e-87 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 254 / 3e-86 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 254 / 4e-86 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 247 / 3e-83 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 154 / 2e-46 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 144 / 9e-43 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 139 / 7e-41 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 137 / 6e-40 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 132 / 6e-38 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 132 / 6e-38 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 129 / 7e-37 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 127 / 3e-36 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 125 / 1e-35 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 119 / 6e-33 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10025121 pacid=23167732 polypeptide=Lus10025121 locus=Lus10025121.g ID=Lus10025121.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACTCTAGATCCAACAGTTTACCATCCAGACCACACCCTCTAGTTTCAGAGCTCGACGAGCAACTTTGCAGGCTGAGACAAT CTCAAGCTGCCTCCACATCATCATCATCCATAAGCCAAAAGCTTAATGGTCTTGGGGATGTGTATGAGTGTGTTGACAAGTTGATTCAACTTCCATCAAC TCAACAAGCCATGATCAATGACCAAAATGAGCTACTAAATTCTCTGAGGCTCTTGGATATGTGCAACACAGCCAAGGATGCCTTGTCCCAAATGAAAGAG TCTGTTTTTGAACTTCAATCCGCCATTCGCAGAAGGCAAGGAGATCTGGTAGCAGAAACCAAGAGATATCTCAACTCAAGGAAGACTGTGAAGAAAGCAA TCCTAAAGGCCCTGAAGGGTAATGAAAACAAGAAATCCACCTCATCCAACAACAGTGATGCAATCGACATGTTAAGAGAAGCTGAATCCATTGTTTTTGA GGTGTTGGAGAACTTCTTGTGTTTCATTTGCCAATCAAACTCCAAGTCCAGCAGTTGGTCATAA
AA sequence Show only first row Show all	>Lus10025121 pacid=23167732 polypeptide=Lus10025121 locus=Lus10025121.g ID=Lus10025121.BGIv1.0 annot-version=v1.0 MAATTFHSRSNSLPSRPHPLVSELDEQLCRLRQSQAASTSSSSISQKLNGLGDVYECVDKLIQLPSTQQAMINDQNELLNSLRLLDMCNTAKDALSQMKE SVFELQSAIRRRQGDLVAETKRYLNSRKTVKKAILKALKGNENKKSTSSNNSDAIDMLREAESIVFEVLENFLCFICQSNSKSSSWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10025121 [exp]	0	1
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	2.0	0.9059
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	6.9	0.8862
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	10.2	0.8795
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	13.4	0.8711
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	15.6	0.8697
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	16.0	0.8556
AT2G28605			Photosystem II reaction center...		Lus10038658 [exp]	16.4	0.8346
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	17.8	0.8796
					Lus10043467 [exp]	17.9	0.8198
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017850 [exp]	18.0	0.8602

Compare expression of checked genes

Lus10025121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.