Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14120 578 / 0 Major facilitator superfamily protein (.1) AT3G01930 573 / 0 Major facilitator superfamily protein (.1.2) AT5G50520 523 / 0 Major facilitator superfamily protein (.1) AT5G50630 523 / 0 Major facilitator superfamily protein (.1) AT4G34950 280 / 9e-87 Major facilitator superfamily protein (.1) AT1G80530 180 / 2e-49 Major facilitator superfamily protein (.1) AT2G39210 177 / 3e-48 Major facilitator superfamily protein (.1) AT2G16660 171 / 1e-46 Major facilitator superfamily protein (.1) AT1G74780 159 / 3e-42 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G28120 155 / 1e-40 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023961 [exp] 895 / 0 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 567 / 0 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 565 / 0 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10028803 [exp] 290 / 2e-90 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 290 / 2e-90 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 286 / 3e-89 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 182 / 3e-50 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 174 / 4e-47 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 174 / 5e-47 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098900 [exp] 682 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 609 / 0 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 602 / 0 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.003G012300 [exp] 299 / 3e-94 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 295 / 2e-92 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 286 / 5e-89 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 180 / 2e-49 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 179 / 2e-49 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 166 / 1e-44 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 167 / 2e-44 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10025123 pacid=23167834 polypeptide=Lus10025123 locus=Lus10025123.g ID=Lus10025123.BGIv1.0 annot-version=v1.0 ATGGAAGCGGGGGAAGGCAGTAGAAAGTCGATGAACTCGAAATTCAGGGCCTTGGGGAGCAGCAGATGGCTGGTATTCGTGTGCTCAATGTGGCTACAAT CATGCGCTGGGATTGGCTACATGTTTGGTAGCATTTCCCCTGTGATTAAGACTTCCATGGGTTATAACCAGAAACAGCTCGCCTTGCTTGGAGTTGCTAA GGATCTTGGTGATAGTATTGGATTCGTGCCTGGGAGTCTCATTGAGCTTTTCCCCACTTGGGTACTTCTCCTTATCGGTGCTCTTCAAAACTTCCTTGGC TATGGCTTCGTTTGGCTTATCGTCACTCAAAGATTGCCTGCTCTGCCTCTTTGGGCGCTTTGTGCCGCTATTTTTGTGGGTACAAATGGGGAGACCTATT TCAATACAGCTGATCTTGTTTCAAGTGTCCAGAACTTCCCAAAGAATCGTGGTCCTGTTGTTGGGATTCTGAAAGGATTTGCAGGGTTGAGTGGAGCAAT TCTAACTCAAGTGTATGCTATGATCAATTCTCCCAACCAAGCTTCATTGATCTTCATGGTTGCAGTTGGCCCATCCATGGTAGCTATTGCTCTCATGTTC TTGGTTAGGCCTGTAGAGGGTAACAAACAATCAGATAGTTCAAGCAGCTTCTCCTTTGTCTATGGAGTTTGCATACTTCTAGCTGCATATTTACTCGGCA TCTTGATAGTGAATGATGTGGTTGATCTCAGTCAAAATCTGGTCACCCTCCTCACTCTAGTCTTGCTCCTCATTGTATTAGCTCCTGTTTTGGTTCCACT TAAGTTGGTTTTCTTCTCTGGACCAATACCAACTATAGATGAGCACCTTCTTTCTAAGCAAGTAGCAGCAACTAGACATCCACCAGAGCGATTAGGAAGC TTCGTTTTAAGTGAAACTGAAGACGAAGATTCCGTTTCATCAACATCGGAAAGGAATAAAAGAATGGCTCACTTGCAAGCTAAACTATACCAAGCTGCAG CAGAAGGAGCCGTTAGGAGAAAAGGAAATCCACGCCGAGGGGAAGACTTCACCTTAATGCAGGCATTAGTGAAAGCTGATTTCTTGCTAATTTGGTTCTC TCTTGTTCTGGCTGCTGGATCCGGCCTTACAGTGATTGATAACCTCGGCCAGATTTGTCAGTCGCTCGGGTATGATGATGCGAACATATACGTTTCAATG ATGAGCATTTGGAACTTTCTTGGCCGTGTTGCTGGGGGCTACTTCTCTGAGGTAATCGTAAGAAAATTTGCCTATCCGAGAGTTGTGGCTATGGCAGCAG TAGAGTTCATAATGGCATTGGGATTGTTCTACTCTGCCATGGGATGGCCAGGACAGATTTACGTAGTGAGTGTTGTGATTGGACTTACTTATGGTGCCAA TTGGGCGATTGTTCCTGCAGCAGTGTCTGAACTATTCGGGTTGAAGAGTTTCGGAGCTTTGTACAATTTCCTTAATCTTTCAACTCCTGCAGGATCTCTG GTATTCTCTGGTGCCATTGCTAGCAGAATATATGATTACTACGCTGAACAACAACAAGCTGGCCAGAATGGACAAACTCTCAAGTGTATGGGTTCCATAT GTTTTTCCTTAACTTTTGGGATCATGGGTTGTCTCTGCATTTTGGCTATGGTGTTGAGCATGATTGTCGTTCGTCGCACCAAAAGGGTCTACGCTCAGCT TTATGGAAACACTCTTGCCTGA
AA sequence Show only first row Show all	>Lus10025123 pacid=23167834 polypeptide=Lus10025123 locus=Lus10025123.g ID=Lus10025123.BGIv1.0 annot-version=v1.0 MEAGEGSRKSMNSKFRALGSSRWLVFVCSMWLQSCAGIGYMFGSISPVIKTSMGYNQKQLALLGVAKDLGDSIGFVPGSLIELFPTWVLLLIGALQNFLG YGFVWLIVTQRLPALPLWALCAAIFVGTNGETYFNTADLVSSVQNFPKNRGPVVGILKGFAGLSGAILTQVYAMINSPNQASLIFMVAVGPSMVAIALMF LVRPVEGNKQSDSSSSFSFVYGVCILLAAYLLGILIVNDVVDLSQNLVTLLTLVLLLIVLAPVLVPLKLVFFSGPIPTIDEHLLSKQVAATRHPPERLGS FVLSETEDEDSVSSTSERNKRMAHLQAKLYQAAAEGAVRRKGNPRRGEDFTLMQALVKADFLLIWFSLVLAAGSGLTVIDNLGQICQSLGYDDANIYVSM MSIWNFLGRVAGGYFSEVIVRKFAYPRVVAMAAVEFIMALGLFYSAMGWPGQIYVVSVVIGLTYGANWAIVPAAVSELFGLKSFGALYNFLNLSTPAGSL VFSGAIASRIYDYYAEQQQAGQNGQTLKCMGSICFSLTFGIMGCLCILAMVLSMIVVRRTKRVYAQLYGNTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	0	1
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	1.0	0.9713
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	1.4	0.9601
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	1.7	0.9514
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	3.0	0.9350
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	5.5	0.9400
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	6.6	0.9451
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	10.2	0.9252
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	11.8	0.9314
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	12.0	0.9322
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	12.7	0.9391

Compare expression of checked genes

Lus10025123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.