Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 165 / 4e-50 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 156 / 1e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 155 / 2e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 151 / 1e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 80 / 2e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 77 / 2e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 64 / 1e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 60 / 4e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 57 / 2e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 51 / 2e-07 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025125 [exp] 390 / 1e-138 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 387 / 2e-137 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 376 / 6e-133 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014446 [exp] 374 / 3e-130 AT2G17080 211 / 3e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 354 / 3e-124 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 347 / 1e-121 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 346 / 6e-121 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 341 / 6e-119 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 340 / 1e-118 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 182 / 7e-56 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 178 / 7e-55 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 169 / 2e-51 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 165 / 1e-49 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 156 / 3e-46 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 155 / 7e-46 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 154 / 2e-45 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 153 / 5e-45 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 141 / 9e-41 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 132 / 5e-37 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10025124 pacid=23167802 polypeptide=Lus10025124 locus=Lus10025124.g ID=Lus10025124.BGIv1.0 annot-version=v1.0 ATGGCAGCCGTCACCTTCCACGCTCGATCCAACAGTTTCCCTTCAAGATCACACCCTCTCGTTTCGGAGTTTGAGGATCAGCTTTGCAGGTTGAGACAAT CTCAATCTGCCTATACATCATCATCATCATCATCATCATCCATAAGCAACAGGCTTAATGGTCTTCAGGATGTCTATGATTGTGTTGACAAGTTGATTCA ACTTCCATCAACTCAACAAGCCATGATCCATGACCAAAACGAGCTACTAGATGGATCTCTGAGACTCTTGGATCTATGCAACGCAGCCAAGGATGCCTTG TCTCTAACGAAAGAGTCGGTTTGTGAACTTCAATCCGCCATTCGTAGAAGGCAAGGAGATCTGATAGCAGAAACCAGAAGGTACCTCAACTCAAGGAAGA CTGTGAAGAAAGCAATCCAAAAGGCCTTGAAGGGTTATGAAACCAAGAAATCTACTTCTTCCAGCAACATCGATGCAATCGACATGTTAAGAGAAGCTGA ATCCATTGTTGTTGAGGTGTTGGAGAACCTGTTGTCATTCATTTCTCAATCAAACTCCAAGTCAAGCAGCTGGTCTTTGGTCTCCAAGCTGATGGCAAAA AGAGTTATTGCAGCATCAGAAAACGAATTTGCAGAAGTGGATGCCTGTTTGAAGACAAGCAAATCCAGTGAGGAAATCCAAGCTCTTCTGAAGAACTTGC AGCCATGCATTCAAGATCTTGAAGAAGGAGTTGAGTCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10025124 pacid=23167802 polypeptide=Lus10025124 locus=Lus10025124.g ID=Lus10025124.BGIv1.0 annot-version=v1.0 MAAVTFHARSNSFPSRSHPLVSEFEDQLCRLRQSQSAYTSSSSSSSSISNRLNGLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLDLCNAAKDAL SLTKESVCELQSAIRRRQGDLIAETRRYLNSRKTVKKAIQKALKGYETKKSTSSSNIDAIDMLREAESIVVEVLENLLSFISQSNSKSSSWSLVSKLMAK RVIAASENEFAEVDACLKTSKSSEEIQALLKNLQPCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	0	1
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	2.4	0.9688
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	2.8	0.9690
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	3.9	0.9649
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	5.5	0.9450
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	5.7	0.9619
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	6.7	0.9592
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	8.9	0.9619
AT1G19530			unknown protein		Lus10002540 [exp]	10.7	0.9612
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	10.8	0.9402
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10012696 [exp]	10.8	0.9204

Compare expression of checked genes

Lus10025124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.