Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 182 / 1e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 172 / 6e-53 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 171 / 2e-52 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 166 / 2e-50 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 100 / 5e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 98 / 6e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 87 / 4e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 64 / 9e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 60 / 2e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 57 / 3e-09 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023959 [exp] 401 / 7e-143 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 399 / 5e-142 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 377 / 1e-133 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014446 [exp] 381 / 3e-133 AT2G17080 211 / 3e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 377 / 3e-133 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 372 / 1e-131 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 360 / 1e-126 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 358 / 7e-126 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 357 / 1e-125 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 200 / 5e-63 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 198 / 1e-62 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 196 / 6e-62 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 184 / 2e-57 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 184 / 3e-57 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 182 / 1e-56 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 179 / 3e-55 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 175 / 1e-53 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 146 / 1e-42 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 134 / 4e-38 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10025125 pacid=23167856 polypeptide=Lus10025125 locus=Lus10025125.g ID=Lus10025125.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGATCCAACAGTTTCCCATCAAGATCACACCCTCTAGTTTCGGAGTTCGACGAGCAACTTTGCAGGTTGAGACAAT CTCAAGCTGCCTCCACATCATCATCATCCATAAGCAACAGTCTTAATGGCCTTCAGGATGTGTATGACTGTGTTGACAAGTTGATTCAACTCCCATCAAC TCAGCAAGCCATGATCCATGACCAAAATGAGCTATTGGATGGATCCCTCGGAGTCTTGGATATGTGCAACGCAGCCAAGGATGCTTTGTCTCAAACAAAA GAGTCAGTTTGTGAACTTCAATCCGCAATTCGTAGAAGGCAAGGAGATCTGGTAGCAGAAACCAGAAGGTACCTCAACTCAAGGAAGACTGTGAAGAAAG CAATCCAAAAGGCCTTGAAGGGTTATGAAACCAAGAAATCTACTTCTTCCAACAACATCGATGCAATCGACATGTTAAGAGAAGCTGAATCAATTGTTGT TGAGGTGTTGGAGAACCTGTTGTCATTCATTTCTCAATCAAACTCCAAGTCAAGCAGCTGGTCTTTGGTCTCCAAGCTGATGGCAAAAAGAGTTATTGCA GCATCAGAAAACGAATTTGCAGAAGTGGATGCCTGTTTGAAGACAAGCAAATCCAGTGAGGAAATCCAAGCTCCTCTGAAGAACTTGCAGCAATGCATTC AAGATCTTGAAGAAGGAGTTGAGTCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10025125 pacid=23167856 polypeptide=Lus10025125 locus=Lus10025125.g ID=Lus10025125.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSRSHPLVSEFDEQLCRLRQSQAASTSSSSISNSLNGLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLGVLDMCNAAKDALSQTK ESVCELQSAIRRRQGDLVAETRRYLNSRKTVKKAIQKALKGYETKKSTSSNNIDAIDMLREAESIVVEVLENLLSFISQSNSKSSSWSLVSKLMAKRVIA ASENEFAEVDACLKTSKSSEEIQAPLKNLQQCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	1.0	0.9357
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	1.4	0.9331
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	4.2	0.9221
					Lus10005096 [exp]	10.0	0.9075
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	10.6	0.9214
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	11.6	0.8806
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	14.0	0.8913
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030880 [exp]	14.8	0.7992
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	15.5	0.9066
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	15.7	0.9038

Compare expression of checked genes

Lus10025125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.