Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18465 980 / 0 RNA helicase family protein (.1) AT1G32490 548 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 542 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 530 / 1e-174 ATP-dependent RNA helicase, putative (.1) AT2G47250 499 / 6e-168 RNA helicase family protein (.1) AT3G62310 497 / 3e-167 RNA helicase family protein (.1) AT1G26370 469 / 3e-156 RID1 RNA helicase family protein (.1) AT5G13010 471 / 3e-151 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G27900 387 / 6e-125 RNA helicase family protein (.1) AT4G16680 385 / 1e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036783 [exp] 533 / 2e-175 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 520 / 4e-171 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 454 / 4e-146 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10033690 [exp] 437 / 1e-137 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 406 / 6e-132 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 388 / 3e-125 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 384 / 9e-124 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10005261 [exp] 375 / 1e-119 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 251 / 4e-75 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052700 [exp] 1027 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.015G008700 [exp] 534 / 2e-177 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 536 / 6e-177 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 526 / 6e-173 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.002G192500 [exp] 502 / 5e-169 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 492 / 3e-165 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 468 / 1e-155 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 469 / 3e-150 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.010G057200 [exp] 400 / 6e-130 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 238 / 4e-66 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10025127 pacid=23167764 polypeptide=Lus10025127 locus=Lus10025127.g ID=Lus10025127.BGIv1.0 annot-version=v1.0 ATGACGCAGTTCTGGAAACCTGGGGGCGAGAGGCCGCAACTTCTCGATGACGGAGAAGGCGGCGTTCTGTTCGTTTCTTCCTCAGCCCCTTCTTCATCTT CCTCGGGCTTTGGGTATGGTAGCATCGAGAAGCAGAGGCAGAGATTGCCTGTGTACAAATACAGGAATTCGATTCTTTATCTGGTTGAGACTCACGCTAC CACTATAGTTGTTGGGGAGACTGGCAGTGGCAAGACCACTCAAATCCCTCAGTTCCTTCATGAAGCAGGTTGGGGTTATGGTGGGAGGGTAATAGCTTGC ACCCAACCGAGACGACTGGCTGTCCAGTCTGTAGCTGCAAGGGTGGCTGAAGAGATGGGGGTAAAGCTAGGAGAGGAAGTTGGCTACACAATTCGATTTG AGGATGTTACAAATGTGGATAAAACAGTGATAAAATTTCTCACAGATGGAGTCTTACTAAGAGAAATGATGGATGATCCACTTCTGTCTAGATATAGTGT TATAATGGTGGATGAAGCTCATGAAAGATCTATTTCAACTGATATTTTGCTAGGCCTTCTGAGAAAGATCCAACGACGCCGGCCTGAGTTGCGCTTGATT ATTGCGTCAGCTACAATTGAGGCAAAGTCGATGGCCTCTTTCTTCCAAAGCAGCAAGAAGCATCGGGAAGGGGGAGCAAGTGACGTTGGTCCATCTAAAG AGCCTGCGATTCTCTCAGTTGAGGGTAGAGGGTTTAGTGTACAAATTCATTTTGTGGAAGAGCCTGTCTCTGACTATGTCCAAGCTGCAGTTTCAACAGT GCTTCTGATTCATGATCAGGAACCTGCAGGTGATATCTTAGTGTTTCTTACTGGCCAGGACGACATTGATGCTGCTGTTCGGTTGCTTACTGAAGAAGTT CAATCGAGTGGAAAGAAATTCTCTGGGTTGGTTATTTTGCCTCTCTATTCAGGTCTTCCTCGTGTGGATCAGGTAGTCAGTTGCCCCATTATTGTTGTTG AAGACTATGCGAAGGTTTATGTAATCCTTGTCCTTATTTGCCGTCTCTTAATTCTGAAGGATTTAGTTTTCTCCCCAAGTCCCCGAGGGAAGAGGAAAGT TGTTATATCAACCAATATTGCTGAGACATCATTGACTTTGGAGGGTGTTGTGTATGTTGTTGATAGTGGATTCTCAAAACAGCGGTTCTATGATCCGATG TCTGATATTGAGAATTTGGTCGTAGCACCAATATCTAAGGCATCTGCTAGACAAAGAGCTGGCAGAGCTGGAAGAGTTCGACCAGGGAAATGTTACAGGT TGTACACGGAAGAATATTTTCTGAATCAAATGTCTGCTGAGGGAATCCCTGAGATTCAGAGGTCAAAGTTAGTTTCCTGTGTGATCCAGTTAAAATCCTT AGGCATAGACAATATACTTGGCTTTAATTGGCCAGCATCTCCATCCTCCGAAGCAATGATTCGAGCTCTTGAAGTTCTGTATTCTTTAGGCGTTCTGGAT GATGACGCTAAACTTACTTCACCAGTTGGATTTCAAGTGGCAGAAATTCCTCTGTCGATTTGGGTTTCTAGTCGAGGAATGCAAAAGGAACTAGACGAAG CCCGATTGAGGTTTGCTGCAGCTGAGGGAGACCATGTTACCTTCCTGAATGTTTACAAGGGTTATCTTCAATCCCGTAAATCTTCCGATTGGTGTCGCCG GAACTGTGTGAATTCTCATGCAATGAAAAAAGTTGTTGAAATTAGAGGACAACTCAAGAGAATAGCACAGAGATTGGGCATAGCTCTGAAGTCATGTGAA TCGGATATGATTGTATTACGTAAAGCAGTAACTGCTGGATTCTTTGCCAATGCCTGCTGCTTGGAAGCATTCAGCCATAATGGAATGTACAAGACCGTTC GAGGATCTCAAGAAGTTTACATCCATCCTTCGTCTGTGTTATTCAGAGTGAACCCGAAGTGGGTTGTTTACCATTCTCTAGTCTCAACGGATCGACAATA CATGCAGAATGTGATCGCCATTGAACCTTCATGGTTACCCGAAGCTGCTCCACACTTCTATCAGAAGCGACAACTAGGCCCCACCATCCATTGA
AA sequence Show only first row Show all	>Lus10025127 pacid=23167764 polypeptide=Lus10025127 locus=Lus10025127.g ID=Lus10025127.BGIv1.0 annot-version=v1.0 MTQFWKPGGERPQLLDDGEGGVLFVSSSAPSSSSSGFGYGSIEKQRQRLPVYKYRNSILYLVETHATTIVVGETGSGKTTQIPQFLHEAGWGYGGRVIAC TQPRRLAVQSVAARVAEEMGVKLGEEVGYTIRFEDVTNVDKTVIKFLTDGVLLREMMDDPLLSRYSVIMVDEAHERSISTDILLGLLRKIQRRRPELRLI IASATIEAKSMASFFQSSKKHREGGASDVGPSKEPAILSVEGRGFSVQIHFVEEPVSDYVQAAVSTVLLIHDQEPAGDILVFLTGQDDIDAAVRLLTEEV QSSGKKFSGLVILPLYSGLPRVDQVVSCPIIVVEDYAKVYVILVLICRLLILKDLVFSPSPRGKRKVVISTNIAETSLTLEGVVYVVDSGFSKQRFYDPM SDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFLNQMSAEGIPEIQRSKLVSCVIQLKSLGIDNILGFNWPASPSSEAMIRALEVLYSLGVLD DDAKLTSPVGFQVAEIPLSIWVSSRGMQKELDEARLRFAAAEGDHVTFLNVYKGYLQSRKSSDWCRRNCVNSHAMKKVVEIRGQLKRIAQRLGIALKSCE SDMIVLRKAVTAGFFANACCLEAFSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWVVYHSLVSTDRQYMQNVIAIEPSWLPEAAPHFYQKRQLGPTIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	0	1
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	1.7	0.9171
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	1.7	0.9371
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	2.8	0.9169
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	3.2	0.9175
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	3.2	0.9116
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	3.5	0.9110
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	4.7	0.9018
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	5.2	0.9041
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	5.7	0.9069
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	5.8	0.8953

Compare expression of checked genes

Lus10025127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.