Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 382 / 1e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 350 / 3e-122 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 253 / 9e-84 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 239 / 2e-78 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 90 / 3e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 72 / 1e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 71 / 1e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G05370 69 / 2e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 66 / 3e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G14820 64 / 1e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010804 [exp] 442 / 1e-158 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 437 / 9e-157 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 362 / 9e-127 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 360 / 5e-125 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 270 / 2e-89 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 267 / 4e-89 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 222 / 8e-73 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 99 / 1e-24 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 97 / 7e-24 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261000 [exp] 391 / 2e-138 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 375 / 4e-132 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 373 / 2e-131 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 365 / 4e-128 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 268 / 1e-88 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 260 / 3e-86 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 105 / 4e-27 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 96 / 2e-23 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 93 / 4e-22 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 91 / 1e-21 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10025128 pacid=23167784 polypeptide=Lus10025128 locus=Lus10025128.g ID=Lus10025128.BGIv1.0 annot-version=v1.0 ATGTTTCGACGCAGGGCTAATGCTCACCAGGAACGTGAGAATGAATATCAGCAACAAGAGGCTAAGATCAATGAGCTTAAGGCCGCCATTGGTCCTTTGT CAGGCCGGAGCTCGATGTATTGTAGCGACGCATGCTACAAAATGTACTTGGAAGCAAGGAACTGGAATGTGGAGAAAGCCAAGAAGATGTTGAAAGACAC TATTGAATGGAGGTCAAGCTACAAGCCTGAGGAGATTCGTTGGCCAGAGGTTGCACATGAAGGCGAAACTAGGAAGATATTCAGGGCCAGTTTCCGCGAC AGACAAGGAAGGTCTGTTCTTATTCTGAGGCCTGGAATGCAGAATACGAAATCGTTTGAAAACCAAATCCGTCATCTGGTATATCTCCTGGAGAATGCTG TACTCAACCTTCCAGAGGAGCAAGAAAAGATATCCATCCTGATAGATTACACAGGTTGGTCTATCACAAACAAAGTTCCCATCAAAACAGCTCGCGAGAC TATCTCCTTCCTGCAAAACCACTACCCGGAGAGACTAGCAGTCGTGTTTTTCTACAGTCCCCCCAAAATCTTTCAAGCTTTCTGGATGGTTGTGAACTAC TTCCTGGATCCCAGGACAATTGAGAAAGTAAAGTTTGTGTACCCGAAGAACCAAGAAAGCGTAGAGGTCATGAGAGCATTCTTTGACGATCAGAACCTTC CAGCTGCGTTTGGAGGGGAATCTAACTTGGAGTATGACCATGCAGAGTTCTCAAAGCTTATGCTTCAAGATGATGTGAAGACTGCTTCATTCTGA
AA sequence Show only first row Show all	>Lus10025128 pacid=23167784 polypeptide=Lus10025128 locus=Lus10025128.g ID=Lus10025128.BGIv1.0 annot-version=v1.0 MFRRRANAHQERENEYQQQEAKINELKAAIGPLSGRSSMYCSDACYKMYLEARNWNVEKAKKMLKDTIEWRSSYKPEEIRWPEVAHEGETRKIFRASFRD RQGRSVLILRPGMQNTKSFENQIRHLVYLLENAVLNLPEEQEKISILIDYTGWSITNKVPIKTARETISFLQNHYPERLAVVFFYSPPKIFQAFWMVVNY FLDPRTIEKVKFVYPKNQESVEVMRAFFDDQNLPAAFGGESNLEYDHAEFSKLMLQDDVKTASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	0	1
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	2.4	0.8700
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	2.6	0.8821
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	4.0	0.8596
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	4.6	0.8613
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	7.7	0.7966
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	9.0	0.8447
AT2G41200			unknown protein		Lus10008568 [exp]	9.5	0.8587
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	12.7	0.8164
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	13.2	0.8502
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10042752 [exp]	14.8	0.7817

Compare expression of checked genes

Lus10025128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.