Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01910 105 / 6e-29 unknown protein AT4G23800 40 / 0.0004 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025214 [exp] 312 / 1e-109 AT5G01910 104 / 2e-28 unknown protein Lus10022734 [exp] 190 / 3e-61 AT5G01910 109 / 5e-30 unknown protein Lus10014179 [exp] 188 / 9e-61 AT5G01910 115 / 3e-32 unknown protein Lus10003904 [exp] 40 / 0.001 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 40 / 0.001 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10035364 [exp] 0 / 1 AT5G01910 44 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109400 [exp] 162 / 2e-50 AT5G01910 96 / 6e-25 unknown protein Potri.016G138300 [exp] 161 / 4e-50 AT5G01910 122 / 2e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025130 pacid=23167803 polypeptide=Lus10025130 locus=Lus10025130.g ID=Lus10025130.BGIv1.0 annot-version=v1.0 ATGCCGCCTCTACAATCTCAACTTGCCGGAGACCAAAAGCCAAGACTGAAGAGTGGCCGGAAACCTCTCCAACCAAAGAATTCATGTGTCGAATCAGAGA TCAAGATTTCAAAGCCAGCCCCAAAGATGGATTTTATCGGGGACAATGACAAGGAGAACCATCATCATCAGCAGCATCCAATTAAAGCCACTACTCCGGC AAGTAAGCTCATTGATCCAATGGATTCGTCGCTGGCAGAGGAGCTGACAGCAATGCGGAAGAGGATGGAGAGGTTGAGGTTGGACGCAAAGAAGACGGAG CAGATGCTGAAGGAGAGAGGGAAGGCGTTGGATTTGCAGATGAAGGAGTTGGAAGTTAGGGGAGTAGCTCAGATTATGCTGGAGTTGGAAGTGGATCGCC TCTACAGATTCAAGGAACTTCACTCTTACTCCATAAGGATTTCCCCAGTTCGATCGCTGAGAGATAAGGAACAAGAAAAGCTGGGCCGCATGGACGAAAT AGTGATGGAAGATAGCAGCGACAGGTTGCAGGGCATGAATGAGAGTCCCTGCTGTTCAAGCTCCAGCTCCAATTCCATTTCAACCCAACCGGCCACTGTT CCTGCTGTGTAG
AA sequence Show only first row Show all	>Lus10025130 pacid=23167803 polypeptide=Lus10025130 locus=Lus10025130.g ID=Lus10025130.BGIv1.0 annot-version=v1.0 MPPLQSQLAGDQKPRLKSGRKPLQPKNSCVESEIKISKPAPKMDFIGDNDKENHHHQQHPIKATTPASKLIDPMDSSLAEELTAMRKRMERLRLDAKKTE QMLKERGKALDLQMKELEVRGVAQIMLELEVDRLYRFKELHSYSIRISPVRSLRDKEQEKLGRMDEIVMEDSSDRLQGMNESPCCSSSSSNSISTQPATV PAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01910			unknown protein		Lus10025130 [exp]	0	1
					Lus10022880 [exp]	12.4	0.7009
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	13.9	0.6869
					Lus10009774 [exp]	25.0	0.6760
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	27.0	0.6215
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	27.4	0.6861
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	28.8	0.6807
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	35.0	0.6414
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	35.6	0.6409
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	39.2	0.6287
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	43.4	0.6054

Compare expression of checked genes

Lus10025130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.