Plant FIBer expression Database

Lus10025132 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28950 56 / 9e-10 unknown protein
AT5G35695 43 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035428
[exp]
201 / 3e-66 ND /
Lus10007175
[exp]
123 / 8e-34 AT5G27260 67 / 2e-12 unknown protein
Lus10006030
[exp]
103 / 8e-26 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1)
Lus10007133
[exp]
100 / 1e-25 AT5G27260 46 / 8e-06 unknown protein
Lus10024452
[exp]
49 / 1e-06 AT5G41980 301 / 2e-100 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10025132 pacid=23167849 polypeptide=Lus10025132 locus=Lus10025132.g ID=Lus10025132.BGIv1.0 annot-version=v1.0
ATGAGGGAACACCAAACTAGATATCGAGATTGGAAGAAGTATATCTCCATAGGTGTATTGGGCGTGTGTAACCCAAATATGGAGTTTATCTACTGTCTAT
CTGGTTGGGAGGGAACATCTCATGATGGAAGGGTGATTCGAGATGCCCTTTTGAGATCACTAGTGTTTGGGAGAGGGCATGCAACTGGAGAAGGAGCTAT
CGGTGCTAACAAGGACACTACTTCGCCGAATGACTCTGATTTTGGCTTTGTTAATGAGAGTTCGTATGATGACGAGGCCACAACGCGCTTCATGGAGAAT
GTCGTGAATGAAGTCGTCGACATGCCAATTCAACTAAACTTTGTTCCTAATGCTGAACGTGCTAACTCGGAACCTAATGCTGGAGCTAAATCTGCAAATA
GGCTGAGTAAAGCTACTGCTCGCAAGATTCAGTTGGAGTCATCCATTGAGGAACTTAAAGTGGAGGTGGTTGAGCTTAGGCCAGCCTTGGAGAGAGCAGT
TGAAAAAATGCTTAACAAAATGTGCGGAGAGGACATTAGTACTGAACATATGAGACGATCAATTATCTATGACCTTGAGAATCTGTCCGGATTGACTCAT
CACCAGATAATTAGTACTGAATAG
AA sequence
>Lus10025132 pacid=23167849 polypeptide=Lus10025132 locus=Lus10025132.g ID=Lus10025132.BGIv1.0 annot-version=v1.0
MREHQTRYRDWKKYISIGVLGVCNPNMEFIYCLSGWEGTSHDGRVIRDALLRSLVFGRGHATGEGAIGANKDTTSPNDSDFGFVNESSYDDEATTRFMEN
VVNEVVDMPIQLNFVPNAERANSEPNAGAKSANRLSKATARKIQLESSIEELKVEVVELRPALERAVEKMLNKMCGEDISTEHMRRSIIYDLENLSGLTH
HQIISTE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G28950 unknown protein Lus10025132
[exp]
0 1
AT5G48920 TED7 tracheary element differentiat... Lus10028626
[exp]
5.0 0.9704
AT3G10410 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CAR... Lus10037381
[exp]
6.5 0.9696
AT2G35930 PUB23 plant U-box 23 (.1) Lus10021267
[exp]
8.8 0.9622
AT3G62160 HXXXD-type acyl-transferase fa... Lus10004527
[exp]
9.3 0.9678
AT4G18425 Protein of unknown function (D... Lus10013969
[exp]
9.8 0.9664
Lus10006423
[exp]
9.9 0.9646
AT4G35350 XCP1 xylem cysteine peptidase 1 (.1... Lus10030722
[exp]
12.4 0.9650
AT1G55180 PLDALPHA4, PLDE... phospholipase D alpha 4 (.1) Lus10036361
[exp]
13.4 0.9646
AT5G22980 SCPL47 serine carboxypeptidase-like 4... Lus10000147
[exp]
14.4 0.9639
AT4G32810 MAX4, CCD8, ATC... MORE AXILLARY BRANCHING 4, car... Lus10001599
[exp]
16.4 0.9472

Lus10025132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.