Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 111 / 2e-28 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT5G01900 91 / 3e-21 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66560 90 / 6e-21 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT2G40750 91 / 1e-20 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT1G66550 90 / 1e-20 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2) AT5G24110 90 / 2e-20 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT1G66600 87 / 5e-20 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G22570 87 / 2e-19 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1) AT2G40740 81 / 2e-17 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT1G80590 79 / 6e-17 WRKY ATWRKY66, WRKY66 WRKY DNA-binding protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025216 [exp] 426 / 1e-150 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10014177 [exp] 165 / 1e-48 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 153 / 3e-44 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10012870 [exp] 117 / 1e-30 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 115 / 1e-29 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 114 / 3e-29 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10034244 [exp] 110 / 4e-28 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 99 / 1e-23 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10039331 [exp] 94 / 2e-21 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109100 [exp] 169 / 8e-50 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 159 / 4e-46 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 128 / 2e-34 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.003G138600 [exp] 96 / 2e-22 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.002G168700 [exp] 96 / 4e-22 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.012G031700 [exp] 95 / 8e-22 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.014G096200 [exp] 91 / 2e-20 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 90 / 2e-20 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090400 [exp] 74 / 1e-14 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.005G086400 [exp] 69 / 1e-13 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10025133 pacid=23167769 polypeptide=Lus10025133 locus=Lus10025133.g ID=Lus10025133.BGIv1.0 annot-version=v1.0 ATGGAGATCATTCATCCGACGCCGCTTAATCGGAAGGAAGCAATCCACGAGATCCTCCGTGGACGGGACTTCACTTGCCAGCTCAGGAAGCTCCTCCTCT CTACTTACGAATCCGGCGGATCTTCTTCTTCTGCTGAAGATCTGGTGGCCAAGATCTTGAAATCCTTCACTCACACTCTCTCAATCTTGAACAGTAATAA TGCCAACTACTCCGAGGTCTCTCAGTGTTTGGATGCTCCCAAGTCGGAGATCTCCTCCGGCGACAGCACTAGTTGTGATAAGATAATAAGCTCCTCCACC AAGGATGACCGCAGGGGATGCAGCTACAAGCGAAGGAAGACAATAACATTATCGGAATCGTGGGCAAACGAGTCGGAAACGCTGGTGGACGACGGGCACC AGTGGAGGAAGTACGGTCAGAAAACCATCCTGAAATCCGATTTCCCGAGGCACTACTACAGATGCACACACAAGAACGACCAGAAGTGCGAAGCCACAAA ACAAGTCCAGATGATCCAATCCCATCCGAAACCCATGTACCGAACCACTTACTACTCCCGCCACACCTGCACCAACCCCATGAACTACTTCTTCCTCGAT CCTCCCCCCTCTAACGACGACGTCCACCTCATCAGCTTCAGCAACAATAATAATACAGCTGGCACTAGCAGCATCAAAGGAGAGCAGCACGACAGCATGA TGATCAGTAGTACCCCTTTCCTGGCATCGTTTCCCACGTCATCACCACCCTCCTCTAGTACTTCGGCGGCTGCGGCTGCTGAAATAGTACCGTTGAAACA GGAATCCTCTGTGGATGTTGGACGACAAGGTGGTGGTAGTACTCAAACCGAAAACCAATCTGACGTGGACGATGATGATGATTACTACCAAAGCGAAACT AGTTACATGCGGATGCTGATGGACCCTCCCACTGTCGACCATGGGTGGTTTTCTGAGTTGAGTTGA
AA sequence Show only first row Show all	>Lus10025133 pacid=23167769 polypeptide=Lus10025133 locus=Lus10025133.g ID=Lus10025133.BGIv1.0 annot-version=v1.0 MEIIHPTPLNRKEAIHEILRGRDFTCQLRKLLLSTYESGGSSSSAEDLVAKILKSFTHTLSILNSNNANYSEVSQCLDAPKSEISSGDSTSCDKIISSST KDDRRGCSYKRRKTITLSESWANESETLVDDGHQWRKYGQKTILKSDFPRHYYRCTHKNDQKCEATKQVQMIQSHPKPMYRTTYYSRHTCTNPMNYFFLD PPPSNDDVHLISFSNNNNTAGTSSIKGEQHDSMMISSTPFLASFPTSSPPSSSTSAAAAAEIVPLKQESSVDVGRQGGGSTQTENQSDVDDDDDYYQSET SYMRMLMDPPTVDHGWFSELS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	1.0	0.9548
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	2.4	0.8824
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	3.2	0.8529
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	3.7	0.8934
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	5.7	0.8375
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	7.7	0.8716
AT1G72460			Leucine-rich repeat protein ki...		Lus10027645 [exp]	8.8	0.8336
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	10.2	0.8335
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	12.0	0.8324
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	12.1	0.8450

Compare expression of checked genes

Lus10025133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.