Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43180 158 / 4e-48 Protein of unknown function, DUF599 (.1) AT5G10580 94 / 5e-23 Protein of unknown function, DUF599 (.1.2) AT4G31330 89 / 3e-21 Protein of unknown function, DUF599 (.1) AT5G24790 77 / 1e-16 Protein of unknown function, DUF599 (.1) AT5G24600 72 / 5e-15 Protein of unknown function, DUF599 (.1.2) AT3G18215 67 / 5e-13 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025217 [exp] 358 / 6e-127 AT5G43180 182 / 2e-57 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 87 / 2e-20 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10032916 [exp] 74 / 2e-15 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 72 / 6e-15 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 68 / 2e-13 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 66 / 2e-12 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10020172 [exp] 64 / 2e-12 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 62 / 3e-11 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 47 / 3e-06 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137800 [exp] 178 / 1e-55 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1) Potri.006G278000 [exp] 88 / 6e-21 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.015G001500 [exp] 72 / 4e-15 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.015G001300 [exp] 68 / 2e-13 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.011G059400 [exp] 53 / 2e-08 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 50 / 3e-07 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10025134 pacid=23167789 polypeptide=Lus10025134 locus=Lus10025134.g ID=Lus10025134.BGIv1.0 annot-version=v1.0 ATGGTGAGCCTGTACGATCTGGAAACTCTACTAGTCTCCTTGAGCGTCTTCGTATTGGTGGGCTACCATTTCTGCCTCTGGTACTTCTTCAACCACAGAC CCTCCCACACCACTCCTGGGATCCACGCCTTGATGCGCAAGCAATGGATGCTCGCCATTAAACAGGGGGACGAGAAGAAGGAAATGCTGGCGGTACAGAG CCTGAGGAACACTCAGATGACGACTATCTTCACCGCCACGGTGGCAATCCTAATCAACACGGCCCTGCCAGCTCTGACCAACAACGTCTACACGACAAGC CCACACCTGCCGATGATGTCGTCCCCGCTGTGGGGGTCCCAGCAGTCCGGGAGGATCACGGTGCTCAAGTACGGGTCGGTCTCGCTGTCTCTCCTGTCCA GCTACCTATGCAGCTCGTTGGGACTCGGGTACATGATGGACGCCAATTTCTTGGTAAACGCCACCGTTTTGGCCTCCGGCAGAAGTGATGGAGGGTCGAG GAAGTGGGCGGCGGAGCACACGGAGAGAGTGATGGAAAGAGGGTTCAGATTGGGGGAATTGGGGAATAGGATTTTGTGCATCAGCTTTCCGCTGCTAGCG TGGCTGTTGGGTCCGATTCCATTGGCGATTTCCACGTTTTGTATGGTTTGGATTCTGTATTCGCTTGATTTCCGATCCGTGAGATCTTTTTGA
AA sequence Show only first row Show all	>Lus10025134 pacid=23167789 polypeptide=Lus10025134 locus=Lus10025134.g ID=Lus10025134.BGIv1.0 annot-version=v1.0 MVSLYDLETLLVSLSVFVLVGYHFCLWYFFNHRPSHTTPGIHALMRKQWMLAIKQGDEKKEMLAVQSLRNTQMTTIFTATVAILINTALPALTNNVYTTS PHLPMMSSPLWGSQQSGRITVLKYGSVSLSLLSSYLCSSLGLGYMMDANFLVNATVLASGRSDGGSRKWAAEHTERVMERGFRLGELGNRILCISFPLLA WLLGPIPLAISTFCMVWILYSLDFRSVRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	0	1
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	1.0	0.8777
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	4.2	0.8080
AT4G02090			unknown protein		Lus10010014 [exp]	6.3	0.8239
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10005477 [exp]	8.2	0.6803
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	11.3	0.7980
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	13.2	0.7792
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	15.9	0.7470
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10004645 [exp]	18.0	0.7668
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	26.0	0.7353
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	30.7	0.7284

Compare expression of checked genes

Lus10025134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.