Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61670 427 / 1e-146 Lung seven transmembrane receptor family protein (.1) AT1G10980 340 / 6e-113 Lung seven transmembrane receptor family protein (.1) AT1G72480 299 / 9e-97 Lung seven transmembrane receptor family protein (.1) AT2G01070 276 / 1e-88 Lung seven transmembrane receptor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025218 [exp] 442 / 1e-156 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 419 / 2e-143 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10030521 [exp] 416 / 4e-142 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 308 / 5e-100 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10008125 [exp] 305 / 6e-99 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 302 / 6e-98 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10005732 [exp] 302 / 1e-97 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10025219 [exp] 166 / 4e-49 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109000 [exp] 465 / 1e-161 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 457 / 7e-159 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 305 / 3e-99 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 303 / 1e-98 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 239 / 1e-73 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10025135 pacid=23167809 polypeptide=Lus10025135 locus=Lus10025135.g ID=Lus10025135.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCTGAATTCTGGAAGTTAGGGCTTATCTTCTCGTCGTTGATTATCATCATCAACTCCCAGTTCGCGAGTGTCAGTGCATCGATTCACGAGT ACACCAACGAAGCCTTCATTTCGCAGCCAGATGCCTTCTTCTTCCACGGCGGCAGCGAAGGCCTCTATGCTTCTAAGGTTCACGATTCTTCCGCTGCTTC TAACGAAAACCGCCTCAGAGGGAAGTCATTCATCAGGTTCGAGGATGTCACCTTTGTGAGGACGAAAGAAGCTGCTAGTAAACAGCACGCGATGCAGCAG AATACTGGATTGGTGGAAGCAATTGTACTGGAGGTTAAGGATAGGGAAAAGATTGGTGGTGGATTTCTGAAGACGGATGTTATCTGCTGTAACCCTACTC TTGCTGGCACGGGAGCTTGCAAGCTAGGTGAGGTGATTATCCAGAAAAACCCGGAGAACCCCGAGTGGCCCAAGCGCATTCAGACTTCGTTTGCAGGACA GAGTGAGGAAGTTAAAATGCAACCTGAAATAGTTGAAATCAATAGTACTGGAATGTATTACCTCTATTTTATGTTTTGTGATCCGCAACTGGAGGGGACC TTGATTAAGGGGAGGACTGTTTGGAAGAACCCAAATGGTTATTTGCCTGGGAAGATGACTCCTCTCATGACATTCTATGGAATCATGTCTCTGGCTTACC TGGGGCTAGGACTACTCTGGTTCCTGAAGTTTGTTCAGTTCTGGAAGGATGTTATACAGTTGCACTACCATATCACGGCTGTTATTGCACTTGGAATGTG TGAAATGGCTATTTGGTATTATGAGTATGCCAATTTCAATTCCACTGGAAGAAGACCGATGGCTGTTACCTTGTGGGCTGTTACCTTCACCACTGTGAAA AAGACCCTATCCAGGCTGCTTCTTTTGGTTGTCTCAATGGGTTTTGGTGTTGTACGCCCTACACTTGGTGGTATAACATCCAAGCTTTACTTCAATGCAA CGGATCCACTTAGCGAGATGTGGAAAATTGGGTGGATAATTCCTGCTTTCTGGACTCTTTTAGCATTCTTTGTATTGGTGGTCATATGCCTCTTGTGGGC TCCTTCACGCAACCCAACAAGATACGCATACATGGAGGAGATAGGAGACGAATTGGACGAGGAAGGGATCTCATTGACAAGCGGCGGACTGAAAGCAACT GTGGATCCAAAGCTGGAGAGAATGGCGGCAGGAGAAGATGTTGAGGAAGACAAGCGAGAGTAG
AA sequence Show only first row Show all	>Lus10025135 pacid=23167809 polypeptide=Lus10025135 locus=Lus10025135.g ID=Lus10025135.BGIv1.0 annot-version=v1.0 MEEAEFWKLGLIFSSLIIIINSQFASVSASIHEYTNEAFISQPDAFFFHGGSEGLYASKVHDSSAASNENRLRGKSFIRFEDVTFVRTKEAASKQHAMQQ NTGLVEAIVLEVKDREKIGGGFLKTDVICCNPTLAGTGACKLGEVIIQKNPENPEWPKRIQTSFAGQSEEVKMQPEIVEINSTGMYYLYFMFCDPQLEGT LIKGRTVWKNPNGYLPGKMTPLMTFYGIMSLAYLGLGLLWFLKFVQFWKDVIQLHYHITAVIALGMCEMAIWYYEYANFNSTGRRPMAVTLWAVTFTTVK KTLSRLLLLVVSMGFGVVRPTLGGITSKLYFNATDPLSEMWKIGWIIPAFWTLLAFFVLVVICLLWAPSRNPTRYAYMEEIGDELDEEGISLTSGGLKAT VDPKLERMAAGEDVEEDKRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	7.7	0.7233
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	11.6	0.7231
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	20.1	0.7005
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	20.1	0.6859
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10000271 [exp]	20.4	0.6532
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	28.8	0.6743
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	33.7	0.6994
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10028372 [exp]	45.7	0.6878
AT5G03440			unknown protein		Lus10026537 [exp]	50.1	0.6532
					Lus10025936 [exp]	51.8	0.6673

Compare expression of checked genes

Lus10025135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.