Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52850 951 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 907 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14720 904 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G14740 904 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT1G30900 759 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 754 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 723 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT2G43070 49 / 1e-05 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G63690 48 / 2e-05 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G21230 44 / 0.0004 WAK5 wall associated kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022737 [exp] 1079 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 1060 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025220 [exp] 1019 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10012366 [exp] 884 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10020967 [exp] 883 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 858 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10006944 [exp] 752 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025361 [exp] 385 / 4e-128 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10031104 [exp] 49 / 1e-05 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108800 [exp] 1051 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137300 [exp] 1042 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.001G294400 [exp] 904 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 901 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.003G155200 [exp] 783 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 780 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 236 / 4e-75 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 67 / 2e-13 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.014G150000 [exp] 49 / 6e-06 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.004G191400 [exp] 47 / 4e-05 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10025136 pacid=23167828 polypeptide=Lus10025136 locus=Lus10025136.g ID=Lus10025136.BGIv1.0 annot-version=v1.0 ATGAGAGAAAAGCTAGCTCTACTGTCCGTCTTCTGTCTTATCCTCTGCGGATCGTGCTTGGGGAAGTTCGTCGTCGAGAAAAACAGCTTGAAGGTCACGT CTCCGGAGTCCTTGAAGGGAGTTTATGAATGCGCCATCGGCAATTTCGGTGTTCCACAGTACGGCGGTACTCTCGTCGGGACTGTAGTTTATCCGAAATC CAATACCAAAGGATGTAAGAGCTTTCAAGAGTTCGATCTCTCCTTCAAGTCCAAGCCCGGCGGTCTCCCGACTTTCCTCCTCGTCGATCGTGGAGAGTGC TTCTTTGCCATGAAGGCATGGAACGGGCAGAATGGCGGTGCAGCGGCAGTTCTTGTTGCAGATGAGAGGGAGGAACCGCTAATCACCATGGACACTCCCG ATGAAGGGAATGTAGATGTCGACTATCTGCAAAACATCACCATCCCATCTGCACTAATTTCCAAGTCATTGGGGGATAGTATCAAGAAGAAACTTTCAGA TGCAGAAATGGTTAACCTTAATCTCGATTGGACAGAAACTCTCCCGCATCCTGATGAGAGGGTCGAATACGAATTCTGGACGAACAGTAACGACGAGTGC GGGCCGAAATGTGACAGCCAAATTGAGTTTGTAAAAGATTTCAAAGGAGCTGCACAAATACTTGAGAAGAAGGGTTACACTCAGTTCACCCCGCATTATA TAACGTGGTACTGTCCAGCAGCTTTCATACTAAGCAAACAATGCAAATCACAGTGCATTAACAACGGAAGGTACTGTGCTCCTGATCCTGAGCAGGACTT CAGCAGAGGATATGATGGCAAAGATGTTGTTGCACAGAATCTGCGCCAAGCTTGCTTCTACAAAGTGGCTAGCGAAAATGGTAAGCCGTGGCTTTGGTGG GACTATGTGGCTGATTTTGCAATCCGTTGCCCCATGAAGGATAAGAAGTACACCAAGGAGTGTGCAGAACAAGTCATTCAATCTCTTGGTTTTGATCTCA AGAAGATTAATGAATGTGTTGGGGACACTGAGGCAGATGTTGATAATGCAATTCTTAAGCATGAACAAGAGGCGCAGATTGGAAAAGGATATCGTGGGGA TGTGACCATTCTGCCAACTCTTGTGATTAACAATAGACAATATAGAGGTAAGCTGGATAAAGGGGCAGTTCTCAAGGCTATTTGTGCAGGTTTCCGAGAG ACCACAGAACCTGCCATCTGTCTAACTTCAGAGCTGCAAACTAATGAATGTTTAGATAATAATGGCGGCTGCTGGCAAGACAAAGCAGCAAACATAACTG CATGCAGGGATACTTTTCGGGGCAGAGTATGTGAATGCCCAGTTGTGCAAGGTGTAAAGTTCACAGGCGATGGCTATACACATTGCAAAGCTTCTGGTGC TTCACGTTGTGCAATCAATAATGGAGGATGTTGGAAGAAATCCCAAGATGGCGCAGTGTTTACTGCGTGCAATGATGCCTTAGACGGCTGCAAGTGTCCT CAAGGGTTCACGGGCGATGGAGTGAATTCCTGTGAAGATGTGGATGAGTGCCAAGAGAAGTCAGCCTGTACATGTCCAGAGTGCAAATGCAAGAATACAT GGGGAAGTTACGAGTGCAGCTGTGGTAGTGGTCTATTATACATGCGAGAATATGACACGTGCATTAGTGAAAGGGCAGTCGCCTCGTCTGGTGCAGGCTC TAGAGTCAGCTTCATATGGGTTCTCATCCTAGTGATGGCAGTCAGTGGTGCTGGATATGCAATTTACAAGTACAGAATCAGGAGATACATGGACTCGGAG ATTCGCGCGATCATGGCTCAGTACATGCCATTGGATAACGGAGAGATTCCTGTTCATAATGCCCAGAGGGGTGATGATATTTAA
AA sequence Show only first row Show all	>Lus10025136 pacid=23167828 polypeptide=Lus10025136 locus=Lus10025136.g ID=Lus10025136.BGIv1.0 annot-version=v1.0 MREKLALLSVFCLILCGSCLGKFVVEKNSLKVTSPESLKGVYECAIGNFGVPQYGGTLVGTVVYPKSNTKGCKSFQEFDLSFKSKPGGLPTFLLVDRGEC FFAMKAWNGQNGGAAAVLVADEREEPLITMDTPDEGNVDVDYLQNITIPSALISKSLGDSIKKKLSDAEMVNLNLDWTETLPHPDERVEYEFWTNSNDEC GPKCDSQIEFVKDFKGAAQILEKKGYTQFTPHYITWYCPAAFILSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVAQNLRQACFYKVASENGKPWLWW DYVADFAIRCPMKDKKYTKECAEQVIQSLGFDLKKINECVGDTEADVDNAILKHEQEAQIGKGYRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFRE TTEPAICLTSELQTNECLDNNGGCWQDKAANITACRDTFRGRVCECPVVQGVKFTGDGYTHCKASGASRCAINNGGCWKKSQDGAVFTACNDALDGCKCP QGFTGDGVNSCEDVDECQEKSACTCPECKCKNTWGSYECSCGSGLLYMREYDTCISERAVASSGAGSRVSFIWVLILVMAVSGAGYAIYKYRIRRYMDSE IRAIMAQYMPLDNGEIPVHNAQRGDDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	2.2	0.9006
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	2.4	0.8972
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	2.4	0.8873
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	2.8	0.8903
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	3.0	0.8920
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	3.9	0.8898
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	5.4	0.8489
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	6.3	0.8755
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	6.6	0.8738
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	7.1	0.8613

Compare expression of checked genes

Lus10025136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.