Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38550 160 / 7e-47 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025221 [exp] 370 / 1e-129 AT2G38550 203 / 2e-63 Transmembrane proteins 14C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137200 [exp] 179 / 3e-54 AT2G38550 263 / 4e-86 Transmembrane proteins 14C (.1) Potri.006G108700 [exp] 177 / 2e-53 AT2G38550 275 / 7e-91 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [flax] [poplar] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Lus10025137 pacid=23167748 polypeptide=Lus10025137 locus=Lus10025137.g ID=Lus10025137.BGIv1.0 annot-version=v1.0 ATGAGTAGCTTATCCTTCACTTCCTTCTCCCTCAAGAACCCTAACATGGCTGCCTCCTCATCCTCCTGCTTTCAACTCCCAGCGCTTCATCCCTCTTCTC CTTCTTCCATTCCGTCTCTCTATTTCCAGCCCTCTTCCTCATCGCTTACGGCCAGGGCTTCTTCAAGACTCTCCGTCGACTTCCTTCTCTCTTCTCTCCG CCGAAGGTCTCCGTTCACTTACATCGTCACCTCCGCCGCCTCTCGCAAGAAATCGGCGAGCCATGATTCCGAAGTGGAGAAGACTGACGATGATCTCGAC GCAACCGAGAATGAAGAGTCGGAAGAAGCTTGGAAGAAGGCTCTTGAATCGTTCAAGGAACAGGCCATACACATGAAAGGTGTTTCCGAGGAAGCTTACC AAGTGTACTCCAAGAAAGCCATGGTAATCCTGGAAGAGACTTCGGAGCAGCTGAAAATTCAAGCTGACAAGGCGAGAAAAGATCTCAACACGTGGGCTAA AGAAGTCAATGAAGCTGCTGAAAACTCTCCTGAAGAGGTGAAGGAGATCCTGGAGACTATAAGTTCTTCAACTGATGTGAAAGATATCTCTGAGCTCAAG GATTACCACGTTGGAATCGGATATGGTTCCTTCTTGTTTGCTGGTGGATTCGCTTCGTTCATGTTGCTTGGGAGCATTTCTGCCATTAGGTTCGGTATGA TTCTCGGGGGTGCTCTTCTCGCTCTTGGTATAACTAGTCGTAGAGCACAAAAGAAGGGAGAGTCGTATGACCTAGCCTTGAAAGGACAAACGGCAATCGC AGCCCTACTTTCTCTTAGGAAGATCACCTTGTTATTTCAGAGGGCTTCTCTTGTCAAATTCATCTCGGCTGTCATCAGGGTTGTTACATGTTTCCCTTTT GCATCTTCTTTACCTTAA
AA sequence Show only first row Show all	>Lus10025137 pacid=23167748 polypeptide=Lus10025137 locus=Lus10025137.g ID=Lus10025137.BGIv1.0 annot-version=v1.0 MSSLSFTSFSLKNPNMAASSSSCFQLPALHPSSPSSIPSLYFQPSSSSLTARASSRLSVDFLLSSLRRRSPFTYIVTSAASRKKSASHDSEVEKTDDDLD ATENEESEEAWKKALESFKEQAIHMKGVSEEAYQVYSKKAMVILEETSEQLKIQADKARKDLNTWAKEVNEAAENSPEEVKEILETISSSTDVKDISELK DYHVGIGYGSFLFAGGFASFMLLGSISAIRFGMILGGALLALGITSRRAQKKGESYDLALKGQTAIAALLSLRKITLLFQRASLVKFISAVIRVVTCFPF ASSLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025137 [exp]	0	1
AT5G62170			unknown protein		Lus10027402 [exp]	24.7	0.8197
AT2G44640			unknown protein		Lus10043347 [exp]	26.3	0.8252
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030476 [exp]	34.3	0.7678
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	44.0	0.8131
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	46.9	0.8112
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	64.4	0.8122
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	74.0	0.7791
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	74.9	0.7586
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	77.9	0.8052
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	112.4	0.7267

Compare expression of checked genes

Lus10025137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.