Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025222 [exp] 173 / 4e-56 ND 37 / 0.002 Lus10004098 [exp] 57 / 1e-09 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 49 / 3e-07 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10000655 [exp] 42 / 0.0001 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016600 [exp] 56 / 1e-09 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 46 / 3e-06 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.008G149600 [exp] 45 / 4e-06 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 41 / 0.0002 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10025138 pacid=23167844 polypeptide=Lus10025138 locus=Lus10025138.g ID=Lus10025138.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCTCCCAAAGACGGAGCCGGCGACGATCTCTACTTGTCTTACATTCAGCGTCTCCTCGTCAAGGGGCAACAAGACAATAATAAGCCCAGCT ACATGGGCCTACAGACCTGTACGGAGGGCATCGGATCCGAATCCGGATACGACAGCGGGTTCTCCTCCTACGCGCCGCCTCATGTCCGCTATTATCCTGT GGAGTATGACGACGACCGGGAAGAGAACGGAGCACCTGACCACCAGCTTCTGGCGAAGATGGCGAATTTCCGAAACGGCAGCGGGGATGGGAACCGCAGA AGCAACGACCGGGAGAAGGAGTCGGTTGCGAGGCCGGCGTTTCCGCCGCCGATTTCTACTCTGGCTCGCGGCGGCCACCGTCCCGGGGAAATAACGAGGA GGAGTTTCCAAATGCGGCGGTATCGGAATGACGGGAGGTTGGTTGTGGAAGTCGTGCCTGCTCAAAACGACAACAGTTACCGAGCTCGTGATCATGAGGA GTAA
AA sequence Show only first row Show all	>Lus10025138 pacid=23167844 polypeptide=Lus10025138 locus=Lus10025138.g ID=Lus10025138.BGIv1.0 annot-version=v1.0 MSSPPKDGAGDDLYLSYIQRLLVKGQQDNNKPSYMGLQTCTEGIGSESGYDSGFSSYAPPHVRYYPVEYDDDREENGAPDHQLLAKMANFRNGSGDGNRR SNDREKESVARPAFPPPISTLARGGHRPGEITRRSFQMRRYRNDGRLVVEVVPAQNDNSYRARDHEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025138 [exp]	0	1
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	1.4	0.8498
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	3.7	0.8037
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	11.8	0.6878
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	12.6	0.7763
AT3G09950			unknown protein		Lus10038794 [exp]	12.8	0.7624
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	15.0	0.7804
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	18.9	0.7304
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	19.7	0.7248
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	48.0	0.6928
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	48.4	0.6506

Compare expression of checked genes

Lus10025138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.