Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01890 947 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 943 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28040 608 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 416 / 6e-131 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 407 / 9e-128 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 357 / 4e-108 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 347 / 2e-103 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 345 / 7e-103 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 343 / 7e-103 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28650 340 / 2e-101 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025223 [exp] 1587 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 1027 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 1019 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012877 [exp] 937 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 932 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 525 / 2e-171 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037276 [exp] 524 / 4e-171 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 442 / 6e-141 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031108 [exp] 361 / 1e-109 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137000 [exp] 1145 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 1123 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 986 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 984 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 633 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 626 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G114500 [exp] 446 / 3e-142 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 441 / 2e-140 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G132200 [exp] 374 / 2e-114 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 371 / 3e-113 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025139 pacid=23167866 polypeptide=Lus10025139 locus=Lus10025139.g ID=Lus10025139.BGIv1.0 annot-version=v1.0 ATGCTCTTCTTCTTCTCCTTCTTCTTCCTTCTTCTTCTGGGCGGTGGTTCCGCTCATTCACTAGACCCGACGCTGAACGACGACGTTCTGGGACTCATCG TGTTCAAAGCCGGCCTCCAAGACCCTCACTCCAAGCTCCTCTCCTGGAACGAAGACGACCCGACCCCCTGCAGCTGGGTTGGAGTCCAATGCCACCCGGT TACCCGCCGGGTCACCCGCCTCCTCCTTGACGGATTCTCCCTCTCCGGCCACGTCAGCCACGGCCTCCTCCGCCTCCAGTCCCTTCGAATCCTCTCTTTA TCCAGGAACAACTTCACCGGCGGCATCAGCCCTGACCTCCCCAAACTCCTCCCCAGCCTCCGCGTCGTCGACTTCAGTGACAACAACCTCTCCGGCGAGA TCCCCGACGGGTTCTTCTCCCAACAATGTAGCTCCCTCCGGTTCGTTTCTTTCGCACGGAACCAGCTAACCGGTCATATTCCTACTTCGCTAACTTCCTG CGCCGCTCTGTCAGCTCTCGATCTCTCGTCCAATAAGATTTCGGGTGAATTACCCTCTGCTTTCTGGTCTTTGACCGGGGTCAGAACTCTCGACCTTTCT GATAATCTGCTGGAAGGAGAAATTCCTTCAGGAATCTCCAAGCTATCCGATTTGAAAGCCGTTAGTTTTCGGAATAACAGATTCTCCGGCCAGCTACCCG TCGATATCGGAAGCTGCCCGGGACTGAAAGAAATTGATTTCAGTGGCAACTTTCTAACCGGTTATCTCCCGGAAACACTCCGGAAGGTCAAATCATGTGT CTCTCTAAGGTTAGGGGGAAATTCCTTTACTGGAGAAGTTCCCAATTGGATAGGAGAGCTCACCAGTCTGGAAACCCTAGATCTTTCTGCTAATAACCTC TCCGGTCTGATTCCCATCTCAATAGGAAGACTGAGTCTGCTGAAGCATTTGAATTTGTCAATTAACAAGCTAACAGGAAGCCCTTTGGATGAGAGGGTTG TAGCACCTCTTGAAAAGCTTGAGGTGTTGGATCTGTCTTCAAATGCCCTGTCTGGTGAAATCCCAGCTGAAGTTGGAAGAGCTCTTGGAAAATTGTTGGT GATTAACGTGTCTAGCAATCAGCTAAATGGTGTCATCCCGTCGAGTATAGGACAACTAAAGATGGCGAAAGTAATCGACTTTAGCCGGAATAACCTCAAT GGGAGCATACCTCCAGAAATTGGAGAAGCAGTTTCACTTGTGAGTCTGAGTTTGGAGAACAATTTACTTACTGGTGATATTCCAACCAACATTGCGAAAT GCTCGTCTTTAACATCTTTAATCGTATCGAAGAACAAACTTGCGGGTCGAATCCCGACAGCCATTGGAGATCTAAAAAGCCTTCAGTTAGTGGACTTGTC TTTCAATAACTTCTCCGGAAGGCTACCGAAGGAGCTCACTAATCTTCCCAGCTTATCATCCTTTAACATATCTCACAACAACTTGCAAGGAGAGCTGCCA GTTGGGACGTTCTTCAATGCTATCCCTCTTTCATCCGTGGCTGATAACCCATCTCTATGCGGCTCAGTTGTCAAGCAGGCATGCCCTTCTATTCATCTTA AGCCTATCGTCCTTGATCCAGACTCATCCGATGACTCATCTCCCGGTTCGTCATCCTCCTCGAGACATTACCATAGAAGAGTTGTGCTCAGTATCTCTGC TATGATAGCTATTGGTGCAGCGGCTTTCATTACCCTTAGTGTCATAGCTGTCACTTTGCTCAATATCCATGTGAGGTCTTCTTCTATGTCACGAGCACCG GCTGCAGTGGTGTTTTCTGGTGGAGAGGACTTCAGTTGTTCCTCCGGTGGCAGCGACCCGAACTATGGCAAGCTCGTCATGTTCTCCGGGGATACTGAAT CGGTTGCGGGTGCTCATGCTTTGCTCAACAAGGACTTTGAGATCGGCAGAGGTGGATTCGGTGTTGCTTACAAAACGGTGCTCCAGAACGGGAGGTCAGT CGTCATAAGGAAGCTAGCGGTGTCGAGCTTGGTGAAGTCCCAAGACGAATTTGAGAGAGAAGTGGAGAAACTCGGAAAAGTGAGGCACCATAATCTCGTG GCATTGGAAGGCTATTACTGGACTCCTTCACTGCAGCTGCTTATCAACGAATGTATACCTGGTGGGAGCTTATATAAACAGCTTCACGACGAGACTCAAT CGAGCTGTCTTTCTTGGGGACAAAGGTTCAATGTTATCCTGGGGCTGGCAAAAGGAATAGCGCATTTGCATCAGATGAACATCATACATTACAATCTGAA ATCGACCAACGTATTGATCGATGAAAATGGTGAGGCTAAGGTGGGAGACTTCGGCCTAGCGCGACTGTTACCTGCTCTAGACCGGTGCATCCTGAGCAGC AAGATCCAGAGTGCATTGGGATACATGGCTCCCGAGTTTGCATGTAGAACAGTAAAGATAACTGAGAAATGCGACGTGTATGGGTTTGGAGTGTTGGTGT TGGAGGTGGTGACAGGGAAGAGACCAGTGGAATACATGGAGGACGATGTGGTGGTTCTGAGTGACATGGTGAGGAGATCACTGGAAGATGGGAGGTTGGA GGAATATGTGGATGCCAGGCTCCATGGAGATTTCCCGGCAGACGAGACAATTCCGGTGGTGAAGCTTGGTTTGATATGCGCATCTCAGGTTCCATCCAAC CGGCCTGATATGCAAGAAATTGTTAAGATCTTGGAGCTGATCCAATGTCCTGCAGAGGGCCAAGAACACCTGGAATGA
AA sequence Show only first row Show all	>Lus10025139 pacid=23167866 polypeptide=Lus10025139 locus=Lus10025139.g ID=Lus10025139.BGIv1.0 annot-version=v1.0 MLFFFSFFFLLLLGGGSAHSLDPTLNDDVLGLIVFKAGLQDPHSKLLSWNEDDPTPCSWVGVQCHPVTRRVTRLLLDGFSLSGHVSHGLLRLQSLRILSL SRNNFTGGISPDLPKLLPSLRVVDFSDNNLSGEIPDGFFSQQCSSLRFVSFARNQLTGHIPTSLTSCAALSALDLSSNKISGELPSAFWSLTGVRTLDLS DNLLEGEIPSGISKLSDLKAVSFRNNRFSGQLPVDIGSCPGLKEIDFSGNFLTGYLPETLRKVKSCVSLRLGGNSFTGEVPNWIGELTSLETLDLSANNL SGLIPISIGRLSLLKHLNLSINKLTGSPLDERVVAPLEKLEVLDLSSNALSGEIPAEVGRALGKLLVINVSSNQLNGVIPSSIGQLKMAKVIDFSRNNLN GSIPPEIGEAVSLVSLSLENNLLTGDIPTNIAKCSSLTSLIVSKNKLAGRIPTAIGDLKSLQLVDLSFNNFSGRLPKELTNLPSLSSFNISHNNLQGELP VGTFFNAIPLSSVADNPSLCGSVVKQACPSIHLKPIVLDPDSSDDSSPGSSSSSRHYHRRVVLSISAMIAIGAAAFITLSVIAVTLLNIHVRSSSMSRAP AAVVFSGGEDFSCSSGGSDPNYGKLVMFSGDTESVAGAHALLNKDFEIGRGGFGVAYKTVLQNGRSVVIRKLAVSSLVKSQDEFEREVEKLGKVRHHNLV ALEGYYWTPSLQLLINECIPGGSLYKQLHDETQSSCLSWGQRFNVILGLAKGIAHLHQMNIIHYNLKSTNVLIDENGEAKVGDFGLARLLPALDRCILSS KIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLSDMVRRSLEDGRLEEYVDARLHGDFPADETIPVVKLGLICASQVPSN RPDMQEIVKILELIQCPAEGQEHLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	2.0	0.9542
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	2.8	0.9147
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	7.3	0.9246
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	7.7	0.9225
AT4G28310			unknown protein		Lus10031649 [exp]	10.7	0.8965
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	11.5	0.9151
AT2G37960			unknown protein		Lus10021116 [exp]	11.7	0.9257
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	14.6	0.8823
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	15.4	0.9017
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	16.0	0.9210

Compare expression of checked genes

Lus10025139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.