Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51580 136 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025224 [exp] 529 / 0 AT3G51580 159 / 4e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108400 [exp] 223 / 4e-70 AT3G51580 166 / 6e-48 unknown protein Potri.016G136900 [exp] 223 / 8e-70 AT3G51580 171 / 2e-49 unknown protein Potri.019G058400 [exp] 100 / 4e-24 AT3G51580 59 / 7e-10 unknown protein Potri.001G092300 [exp] 54 / 5e-08 AT1G64385 162 / 2e-46 unknown protein Potri.003G139400 [exp] 49 / 2e-06 AT1G64385 189 / 5e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025140 pacid=23167733 polypeptide=Lus10025140 locus=Lus10025140.g ID=Lus10025140.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAATGGAATGGAGTTGTTGCAGCAATACTTCTGGTGTTGATCGCTGCCGATGTTTCCAACGCGTCCGGGCTCTCCAGCCTCCGGAAGAAGT TGGCGGGATCAGTGACTCTTCCTCAGGACTCAGGCGGAGCTCAAGGCTCTCCGACGCCGAGTCCGAATCCTGTGAATACTACATCCAATAACTTAACAAC TGTAAACAATCCGACGAAGGAAAACCCGGTGGCGCCAATTACAGTAGATAATTCAACCACGAAAAATCCTGCACCGGCAGGTACAACTGCTGGCGTTCCT GTTGACAAAGAAAAGGTTGCTCAACCTCCAGTAAGCGCTCAAGGAGCTGAGAAGGGTGGGGAGAAAGACAAAGGATCGAAGAAGACGGATACAGATAATA AAGCAGTACCGCAGCAGCAGCTGGAGGCTGGAGAAAATTGTACAGGGTTACCAAGGAGGTGCACTGACCAGAGTTCCTTGACTGCCTGCTTCGTACGGTT TGATGAGGTATCAAGGAAATTTGTGGTATTAGTCGAGAATAATGGAGAACAGAATTTGAGTGTGGCTCTTTCTGCACCAAATTCACTGGATGACGCATCA ATTCAGATAGCAAAACATGAAATTAAAAAGATTAATTTACAAGTTGGAACGAGTGAAGTTGTAAGTTTGGATACAGGGAATGGGGTATGTGTTCTCCACC TGGATCCTGGTTTGGTACAGAGTCAGGGAAACTATGTTTTCCGTCTTCCTTCTTACGACCAGCTACTTACCCCTGTCAATGGTGCGTACTTACTGATCCT TACAGTGGTACTATTTGGGGTAATGTGGGGTTGTTGCTGCTTGTTTAGAAAGAGCAGAGTACAAGGTGAAGTGCCTTATCAAGAGCTCGAATTGGCTGCT CCAAACAATGAGTTGCCTAATGATCTGGAAACAGCAGAAGGCTGGGACGAAGGCTGGGACGATGACTGGAATGACGACATATCGGTCAAGTCTCCAGCCG CACATGCAGGGAGCATTTCAGCCAATGGCCTTACTGCTAGGTCTTCAAACAGAGACTCATGGGAGAAGAACTGGGACGACTAG
AA sequence Show only first row Show all	>Lus10025140 pacid=23167733 polypeptide=Lus10025140 locus=Lus10025140.g ID=Lus10025140.BGIv1.0 annot-version=v1.0 MGRKWNGVVAAILLVLIAADVSNASGLSSLRKKLAGSVTLPQDSGGAQGSPTPSPNPVNTTSNNLTTVNNPTKENPVAPITVDNSTTKNPAPAGTTAGVP VDKEKVAQPPVSAQGAEKGGEKDKGSKKTDTDNKAVPQQQLEAGENCTGLPRRCTDQSSLTACFVRFDEVSRKFVVLVENNGEQNLSVALSAPNSLDDAS IQIAKHEIKKINLQVGTSEVVSLDTGNGVCVLHLDPGLVQSQGNYVFRLPSYDQLLTPVNGAYLLILTVVLFGVMWGCCCLFRKSRVQGEVPYQELELAA PNNELPNDLETAEGWDEGWDDDWNDDISVKSPAAHAGSISANGLTARSSNRDSWEKNWDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51580			unknown protein		Lus10025140 [exp]	0	1
AT3G51580			unknown protein		Lus10025224 [exp]	1.4	0.8630
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	1.7	0.8580
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	2.2	0.8705
AT5G58000			Reticulon family protein (.1)		Lus10036611 [exp]	3.0	0.8259
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	3.5	0.8501
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10000544 [exp]	3.6	0.8057
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	4.5	0.8425
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	4.9	0.8425
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	9.8	0.8116
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	9.9	0.7694

Compare expression of checked genes

Lus10025140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.