Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025225 [exp] 218 / 3e-73 ND / Lus10014171 [exp] 81 / 8e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136800 [exp] 104 / 1e-28 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025141 pacid=23167781 polypeptide=Lus10025141 locus=Lus10025141.g ID=Lus10025141.BGIv1.0 annot-version=v1.0 ATGGATGAAATAGAAGTTGTACTGAAGAGATTTGGGGACGAGCAGAGCACGCTGCTGGACCAGTTCGAGAGGCTGTCGTTTGAAGTGCAGCTGAATCAAG CCATATTAGCCAGAAGCCTGTCGGAGCCCGGAGTGGAAGCGGGTCGGAACAGAGTCCAGCATCCGCTGACTCTAAGAGATCACATAGCAGATGATGGGGA ATCAGAAGTGGTGGTGAAACAGGCGGCGGAAAAGAAGCGTCGTCGTCCTCGTGAGGGGTCGGGTTTTAACAAGTTTTTCAAGAAGTTGCTGAAACCGATT CTGGGCAGGAAGAGGGTGGATGATAAGAAGAAGGACGATCGTTGCACTACAGTTAGTGGGAAAGAGGATCGTCAAGTTCTGGAACCTAAATTCTGCAAGG CGTTTAGCAGATCAGAAGAATTGGCTGGGTATGGCTACCTTACTGTTTCAGATGGAATGATAGCTCTCTCTCTGTTTCCTGCCATGGTTGGTTGTGTTAG TGTAGACGTGTGGAGAAGAAGACCACCAGGGATTGGAATGAACGGAGTGTACTGGGCTTACTTACAGTTCCATCACTGCAGTAGATTCATTTCCTTATCA AGGGAGGAGAAGCCATGA
AA sequence Show only first row Show all	>Lus10025141 pacid=23167781 polypeptide=Lus10025141 locus=Lus10025141.g ID=Lus10025141.BGIv1.0 annot-version=v1.0 MDEIEVVLKRFGDEQSTLLDQFERLSFEVQLNQAILARSLSEPGVEAGRNRVQHPLTLRDHIADDGESEVVVKQAAEKKRRRPREGSGFNKFFKKLLKPI LGRKRVDDKKKDDRCTTVSGKEDRQVLEPKFCKAFSRSEELAGYGYLTVSDGMIALSLFPAMVGCVSVDVWRRRPPGIGMNGVYWAYLQFHHCSRFISLS REEKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025141 [exp]	0	1
					Lus10025225 [exp]	1.0	0.9653
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	2.4	0.9480
AT1G60783			unknown protein		Lus10004622 [exp]	3.2	0.9311
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	3.5	0.9479
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	3.5	0.9456
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	3.9	0.9404
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	4.7	0.9289
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	6.2	0.9267
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	6.5	0.9389
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	6.5	0.9350

Compare expression of checked genes

Lus10025141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.