Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025227 [exp] 181 / 2e-56 ND / Lus10033589 [exp] 100 / 4e-23 AT1G13810 161 / 4e-45 Restriction endonuclease, type II-like superfamily protein (.1) Lus10011962 [exp] 77 / 5e-16 ND / Lus10027047 [exp] 78 / 1e-15 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10011950 [exp] 73 / 2e-14 ND 40 / 0.001 Lus10020970 [exp] 74 / 3e-14 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021761 [exp] 63 / 2e-11 ND / Lus10032960 [exp] 58 / 9e-10 ND / Lus10010369 [exp] 57 / 3e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136300 [exp] 73 / 6e-15 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025143 pacid=23167730 polypeptide=Lus10025143 locus=Lus10025143.g ID=Lus10025143.BGIv1.0 annot-version=v1.0 ATGGGTCGACATGCAATCTCTCAAATGAAGGAGTCTAAAGGCCTTCATAGTCGACCGAGTGGTCCTGGTTTGGATGTCAAAGTCGCTCACATTCGCCAAT TGTTTAGGACGCTTCATGAATATGAAGTTCTTCAATTCTTTGTATCCATTCGTGGTCTGCCACAGGTAATGAGCAATGTGACCGCCAAAATTGGGGATCA TTGTCATCCTCGTTGGTCCACCATCTGGAAGCCCCACAACAAGCTCTCAAGTAAGACCGAGTCCCTCGATGTCCACTTCGGCCGAAATCGGCGGCCGTCA TGGGAAATCATCATTCACGCCAAAGGCAACAGATTCCGATTCCGATTCAAGGCCAAACTCCCCCAAACCAGAACCAAGTTCTCTACATTCCCAATCCTTT CCAGGATATACACTTCCCTCTTCAAACCAAAAGACGCCTTGAAGTTGAAGCCCAAACTCCTCGAAAGATTGAGGCTTTCTCCTTCAAGATCCAAGCAAGA CCTTATTTCCCCGAAAAAAACTAAGATCGCAAAGAACCCAGTAACAAAGATTCCACTCAATCGCCGCCAGGGCAAGACCGACAAGGATGAAAACAATCTG GGTGTGCTGATAGTTAGATCGGTGGAATCATTGTCCCAATCGATAGAGCAGAGGAGTGGAAGGGGGATATTGATCCATGGGACTAGTGTGGTGCTTTTTG CCTTTCTTCTGTGGATGGAACGTTTGAGTAGTAAGGCGAGGAGATTGGTGATGTTTGTAGCAGTGGCAGTTGTAGCTTTGGGAGTGGCATTGCGAGTGAG TGAGAATGTGGGATCTGATCAAGCCAGTGTTTGGGAAGCTTGGAGATATGCTGTGTCTTCTGGCCGTGTAGATGAGCTTTCCCAGGGCTTTGATTATGCA GAGAGGAGGAGGAGGATGGCGGGTTCTGTTCCAAAATATCATCATCATGAATCAGGGCTGCCAGATTAA
AA sequence Show only first row Show all	>Lus10025143 pacid=23167730 polypeptide=Lus10025143 locus=Lus10025143.g ID=Lus10025143.BGIv1.0 annot-version=v1.0 MGRHAISQMKESKGLHSRPSGPGLDVKVAHIRQLFRTLHEYEVLQFFVSIRGLPQVMSNVTAKIGDHCHPRWSTIWKPHNKLSSKTESLDVHFGRNRRPS WEIIIHAKGNRFRFRFKAKLPQTRTKFSTFPILSRIYTSLFKPKDALKLKPKLLERLRLSPSRSKQDLISPKKTKIAKNPVTKIPLNRRQGKTDKDENNL GVLIVRSVESLSQSIEQRSGRGILIHGTSVVLFAFLLWMERLSSKARRLVMFVAVAVVALGVALRVSENVGSDQASVWEAWRYAVSSGRVDELSQGFDYA ERRRRMAGSVPKYHHHESGLPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025143 [exp]	0	1
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	2.0	0.8022
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	2.4	0.8353
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	4.9	0.8144
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	5.1	0.8252
AT5G44005			unknown protein		Lus10003608 [exp]	10.6	0.7938
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	11.3	0.7906
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	11.4	0.7956
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10038941 [exp]	13.8	0.6746
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	14.7	0.7943
AT5G44005			unknown protein		Lus10008220 [exp]	15.5	0.7825

Compare expression of checked genes

Lus10025143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.