Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01880 87 / 3e-22 RING/U-box superfamily protein (.1) AT3G10910 82 / 5e-20 RING/U-box superfamily protein (.1) AT5G05280 71 / 5e-16 RING/U-box superfamily protein (.1) AT1G76410 69 / 5e-15 ATL8 RING/U-box superfamily protein (.1) AT2G17450 68 / 1e-14 RHA3A RING-H2 finger A3A (.1) AT1G72310 69 / 3e-14 ATL3 RING/U-box superfamily protein (.1) AT3G18773 68 / 3e-14 RING/U-box superfamily protein (.1) AT4G17905 67 / 7e-14 ATL4H RING/U-box superfamily protein (.1) AT1G20823 66 / 7e-14 RING/U-box superfamily protein (.1) AT1G53820 66 / 2e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025228 [exp] 145 / 4e-45 AT5G01880 97 / 5e-26 RING/U-box superfamily protein (.1) Lus10025145 [exp] 140 / 3e-43 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10025146 [exp] 100 / 3e-27 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10029037 [exp] 88 / 2e-22 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10036380 [exp] 87 / 4e-22 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10022743 [exp] 84 / 1e-20 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10006786 [exp] 73 / 3e-16 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005818 [exp] 72 / 4e-16 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10005816 [exp] 72 / 7e-16 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136200 [exp] 90 / 4e-23 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 89 / 2e-22 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 85 / 4e-21 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 80 / 3e-19 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 75 / 2e-17 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 73 / 2e-16 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 72 / 4e-16 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 71 / 6e-16 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 70 / 6e-15 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 68 / 7e-15 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025144 pacid=23167820 polypeptide=Lus10025144 locus=Lus10025144.g ID=Lus10025144.BGIv1.0 annot-version=v1.0 ATGACACGAATACCCGCACGCGTGGGCCGTCTCCTGCTCGACTCGCCGGCGGATGAGTCCGACGACGGGGATTATGGAACCAGCTCCGTGGACGAGTATA TCCAGAAAGACTGGAGGTCGGCACTGGCTCTGTTGCTGATCTTTGTCATATTCATTGTCGTATCTGGTATATGGTTGTTCTGCAGGATCGAGCTGAATAG AATTCGGAAGAAGCAATGTCGGCAGCAGATCCCAGTCGCCGTTCATGGGTCGGGTCCTCCTGCCGGCCGGGTGGTGGTGAGTGATGAGTGCTCCATTTGT TTAGGAGAGTTGTTGGACGGCGAGAGAGTTCGGGTGTTGCCCAATTGCAATCATGAGTTTCATGTTCTGTGCATCGACAACTGGCTGGCGCTACACTCCT CTTGCCCTAGTTTTAGCCATTCCGTCGCCGGCGGTTCGCTTCAGAGGCTACAGGAAAATGTTGGTCAGCAAGGGTTGAGTTAA
AA sequence Show only first row Show all	>Lus10025144 pacid=23167820 polypeptide=Lus10025144 locus=Lus10025144.g ID=Lus10025144.BGIv1.0 annot-version=v1.0 MTRIPARVGRLLLDSPADESDDGDYGTSSVDEYIQKDWRSALALLLIFVIFIVVSGIWLFCRIELNRIRKKQCRQQIPVAVHGSGPPAGRVVVSDECSIC LGELLDGERVRVLPNCNHEFHVLCIDNWLALHSSCPSFSHSVAGGSLQRLQENVGQQGLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	6.7	0.7407
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041657 [exp]	8.1	0.6778
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	8.6	0.8077
AT5G12970			Calcium-dependent lipid-bindin...		Lus10033343 [exp]	9.5	0.6226
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	12.1	0.7681
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	12.7	0.7281
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	16.1	0.7579
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	19.2	0.7578
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	26.9	0.7309
					Lus10028570 [exp]	28.3	0.7262

Compare expression of checked genes

Lus10025144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.