Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01880 108 / 2e-30 RING/U-box superfamily protein (.1) AT3G10910 108 / 6e-30 RING/U-box superfamily protein (.1) AT1G49210 104 / 3e-28 RING/U-box superfamily protein (.1) AT5G05280 102 / 5e-28 RING/U-box superfamily protein (.1) AT1G49220 103 / 2e-27 RING/U-box superfamily protein (.1) AT1G49200 101 / 8e-27 RING/U-box superfamily protein (.1) AT1G49230 100 / 2e-26 RING/U-box superfamily protein (.1) AT3G18773 99 / 3e-26 RING/U-box superfamily protein (.1) AT1G76410 95 / 9e-25 ATL8 RING/U-box superfamily protein (.1) AT2G17450 89 / 3e-22 RHA3A RING-H2 finger A3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022743 [exp] 134 / 3e-40 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10029037 [exp] 117 / 8e-34 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10005814 [exp] 110 / 3e-30 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 107 / 9e-29 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006788 [exp] 105 / 3e-28 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10025145 [exp] 102 / 5e-28 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10025228 [exp] 101 / 1e-27 AT5G01880 97 / 5e-26 RING/U-box superfamily protein (.1) Lus10036380 [exp] 100 / 2e-27 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10025144 [exp] 100 / 3e-27 AT5G01880 87 / 5e-22 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136200 [exp] 130 / 1e-38 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 128 / 1e-37 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 119 / 3e-34 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 114 / 9e-32 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 110 / 6e-31 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 109 / 4e-30 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 106 / 1e-29 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 99 / 2e-26 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 99 / 7e-26 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 97 / 2e-25 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025146 pacid=23167783 polypeptide=Lus10025146 locus=Lus10025146.g ID=Lus10025146.BGIv1.0 annot-version=v1.0 ATGACACGAATCCTCACTCTCCACCGCCGCCTCCTCCGTTCAGCTTGGAATGAGATAGAGGATTCGGAAACTAGCAAGGCCGATTTTGAGGGAAACTTAG AGATAGTGCTGGCTGCTCTGCTCTGCGCTCTCATGGTCGCTATCGGCTTGAATTGGATCGCCCACTGCGCGTTGCGCCGCAGCAACAGCCGCCCTGCGGC GGCGGCGGCGGTGAGGAATAATGGGTTGAAGAAGAGTCATCTGAGGCAGATCCCTGTGGCAGTTTACGGGTCGGATGCGGGTGCCCATCATGTGACGGAG TGCTCGATCTGTTTAGGGGAGTTCTTGGACGGGGAGAGAGTTCGGGTCCTGCCCAAATGCAGCCATGGGTTCCACGTGTGGTGCATCGACAAATGGCTGA CGTTACATTCATCTTGCCCCAACTGTCGGCACACGGTGACTGGTTCGAATCCGAAGGTTGTGGGAAATGGTGGGCAAGAAGGTAATGATGTTGATGTGGT TGTTCAAGGTGTTACTTGA
AA sequence Show only first row Show all	>Lus10025146 pacid=23167783 polypeptide=Lus10025146 locus=Lus10025146.g ID=Lus10025146.BGIv1.0 annot-version=v1.0 MTRILTLHRRLLRSAWNEIEDSETSKADFEGNLEIVLAALLCALMVAIGLNWIAHCALRRSNSRPAAAAAVRNNGLKKSHLRQIPVAVYGSDAGAHHVTE CSICLGEFLDGERVRVLPKCSHGFHVWCIDKWLTLHSSCPNCRHTVTGSNPKVVGNGGQEGNDVDVVVQGVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10910			RING/U-box superfamily protein...		Lus10025146 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	3.5	0.9291
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	5.1	0.9278
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	8.5	0.8912
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	9.8	0.9036
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	10.6	0.8931
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	15.2	0.9131
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	16.2	0.8940
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	16.7	0.9001
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	16.7	0.8878
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	22.6	0.8778

Compare expression of checked genes

Lus10025146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.