Plant FIBer expression Database

Lus10025147 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025229
[exp]
203 / 2e-64 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10025147 pacid=23167884 polypeptide=Lus10025147 locus=Lus10025147.g ID=Lus10025147.BGIv1.0 annot-version=v1.0
ATGAGAAGATCGACGCGAAGATCTATTGCCGTTGCTGCTCCCTCTGAAGATGATGTTCAAAGCATTGGTGATAGAAAAGAAGAAGATGAAGTTCGAAGCT
CGATATGGTCTTATGAACATATTGATGTAGCTCGCCCGAATCTATTGGACGCTGGCTTGACTTTTCCTAGAGTTTGCCGTTGGGAAAATAGCAAGGCAAA
TAAGCCGCAATGGTTTGCTGACAAATTTAAGGAGTTACAAGACGATCAGGTAATTTGTGAGCTTGAGCCAACATCTGCTGAAAAAAGTCTGAGTATAGTC
AGGGAACTTCTAAGATCGCAAACTAATGAGAACCAACTTGAACTTGATGAACAGTTTCTTGTGGTTAATGATACTGATGATGAAACTGATCTGGATGCCG
ATACAAGAGAAGCAGTAGCCACAGAAAATTCCAGTTTGCAAGCCTCCCAGACATCCACATCTGGTTATGAGTCAGAGGATCACCAGAAGCTTACTGCGCT
GATGTCATCGGGGGAAGCTCACGTGAACTCTCCTAATGCTAATGTGGCTATCCTTTCTGATACAACTGTTGCAAGTAGCAGAGAAGAACTGGAAACTGTT
GATGTAGATACTCTTAACGTGCTTGCAGTTGAGATTGTTCCTGACACGCCTGTTGCAAGTAGCGGAGAAGAACTAGAACGTATTGATTTGGATAGTCGAA
GCGATCAAGTATCACATTTTGAACAAATGGAGTATCAGGGAAAGGAGGAAGAGTGGAAAAAAGAGAAACAATTGCTGGAAGAGGAGAATCAAAGGCTGAA
AGAGGAGATTGCAGGTCTAATGGAAAAATTAGAAATTGCGGAAGAGGAGACAGAATTGTGCAGGCTCAAACTCTATAAGTTTGAATCTCATATGGAGGGC
ATTTGGCATGACTATAGCTCACAGGTTGACCAATAG
AA sequence
>Lus10025147 pacid=23167884 polypeptide=Lus10025147 locus=Lus10025147.g ID=Lus10025147.BGIv1.0 annot-version=v1.0
MRRSTRRSIAVAAPSEDDVQSIGDRKEEDEVRSSIWSYEHIDVARPNLLDAGLTFPRVCRWENSKANKPQWFADKFKELQDDQVICELEPTSAEKSLSIV
RELLRSQTNENQLELDEQFLVVNDTDDETDLDADTREAVATENSSLQASQTSTSGYESEDHQKLTALMSSGEAHVNSPNANVAILSDTTVASSREELETV
DVDTLNVLAVEIVPDTPVASSGEELERIDLDSRSDQVSHFEQMEYQGKEEEWKKEKQLLEEENQRLKEEIAGLMEKLEIAEEETELCRLKLYKFESHMEG
IWHDYSSQVDQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10025147
[exp]
0 1
AT4G17140 pleckstrin homology (PH) domai... Lus10039773
[exp]
12.5 0.6301
AT4G04900 RIC10 ROP-interactive CRIB motif-con... Lus10018362
[exp]
15.7 0.6753
AT5G48720 XRI1, XRI x-ray induced transcript 1 (.1... Lus10038181
[exp]
20.6 0.6681
AT5G04850 VPS60.2 SNF7 family protein (.1.2) Lus10043454
[exp]
21.2 0.6359
AT5G05830 RING/FYVE/PHD zinc finger supe... Lus10040240
[exp]
23.5 0.6395
AT3G13510 Protein of Unknown Function (D... Lus10013410
[exp]
24.5 0.6715
AT5G63650 SNRK2-5, SNRK2.... SNF1-RELATED PROTEIN KINASE 2H... Lus10004291
[exp]
30.0 0.5794
AT3G06740 GATA GATA15 GATA transcription factor 15 (... Lus10037721
[exp]
36.2 0.6429
AT4G25390 Protein kinase superfamily pro... Lus10030009
[exp]
56.0 0.5444
AT4G17150 alpha/beta-Hydrolases superfam... Lus10038733
[exp]
75.5 0.5863

Lus10025147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.