Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 530 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 334 / 2e-106 MAC/Perforin domain-containing protein (.1.2) AT1G28380 308 / 3e-96 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 280 / 2e-85 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029279 [exp] 543 / 0 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 527 / 0 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 353 / 2e-113 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 327 / 5e-104 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 315 / 8e-99 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 315 / 1e-98 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10012717 [exp] 306 / 1e-95 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 304 / 1e-94 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025235 [exp] 286 / 1e-90 AT1G29690 367 / 8e-123 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135100 [exp] 807 / 0 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 786 / 0 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 551 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 541 / 0 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 364 / 7e-118 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.002G234700 [exp] 322 / 1e-101 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.019G001000 [exp] 318 / 2e-100 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 312 / 5e-98 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G047700 [exp] 311 / 2e-97 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 307 / 3e-96 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10025153 pacid=23167759 polypeptide=Lus10025153 locus=Lus10025153.g ID=Lus10025153.BGIv1.0 annot-version=v1.0 ATGGGTCTAAAGGCTGGAAAGGTAGAGGCTGAGGGGAGAGAACTGGAGAAGTATTGCGATGAAATGGGAGAGAGTGGAATTGGGACTGCGGCAGCGTTGC ACACCGCAATCAACTCCGTTCAGGCGCTCGGGAGGGGTTTCGATGTCAACTTCGATACACGGTTGCTGTACTGCAAAGGAGTAGCCGGGTCTAGGGTTGT CCAGATTGACCAGGACCATACCAGAGATCTCTTTCTCTACGACGACGTTGTAGTACCTCGCGTTTCCAGGGATATCAGGAACTCCCCTGGTTCCCATGGC CGACAGAGTTCCGGTGTCTGCACTTTCCCCGAGATGGTGGAGTACTTCAACAAAAAAGCTCATCTATCAGGAAGTTCTCCAATTGGTAGCTTCAATTCTG CATTCAGCTTTAGTGGTTCCAAGCACATTGATGCTGCTGTCACAAAAACCCTCTCCATGGATGGATATTACATTCCTCTTGCTAAGGTCGAACTGTTCAG GTCACCGTTAGTGTTGCAAGAAAATGTGAAACGGGCTGTTCCAACTTTCTGGGATCCTGCATCATTAGCTAGCTTTATCGAAACTTTTGGCACACATGTT ATCACCTCTGTGACTGTTGGTGGCAAGGATGTTATTTTTGTTAAACAGCATCAATCTTCAGCTTTGACAAAGATGGAGATGAAAAATTATGTCCAGGATA TTGGAAATCAGAGGTTCTCTGACTCAGAAGGTCACACAAGTTCAGGGAGTTGTTCTTTCTTAATTTTCCAGAATGCTGATGCGGGAATCTTTAACAGCCA GGGGATATACCCACAACCTACCACAACATATCTGACTGGGAAAGAGGATGTGACTGTCATTTTCCGAAGGAGGGGTGGAGATGATCTGGAGCAAAACCAT ATCAGATGGGCAAGAACTGTGCGGGGTTCCCCAGATGTCGTGCATATGACTTTCGTCCCCATAACTGATCTTCTTAATACTCCTGGAAAGGATCACCTTG CTCGAGCAATTGGTCTATATCTTGAATGTAAGGCTACTAGGTTGCTTCACCATCATTACTTCCTTTTTCTGATGGGATCCAATAGAAAGTTCATACTCTT GTTAACTGTTGTTTCTTCCTCTTCCGCTCTTTCTATTATATCATTCTTCTCAGACAAACCTCAGATCGAAGAGCTAAGGTATTTTCTGGAGTTCCAGATT CCGCGGCTCTGGGCCCCTGTACGTGACAACATTCCTGGCCACCAGAGAAAGGATCCTGTTTGTCCGTTTCTTCAGTTCAGCATTATGGGGCAGAAGTTGT ATGTTAGTCAAGAGCAGATATCAGTGGGACGGAAGCCGGTAACAGGATTACGGTTATGCCTTGAAGGAGCTAAGCAGAACAGACTAAGCATTCATGTTCA GCATTTAGGACGGGGCCCCGAGGAGCAGGACGGTCGATGGTTCGAGCCAGTGAAGTGGAAGAACTTCTCCCATGTGAGCACTGCACCGATCGAGAACCCA GAAAGCTTCATAGGCGACAATATCGGGGTGTTTGTAGTTACAGGAGCTCAGCTTGGAGTGTGGGATTTCGGGTCAAGAAAGGTCTTGTACATGAAGCTCC TGTATTCGCGTCTTCCCGGTTGTACAATACGAAGGTCGTTGTGGGACCATTCGCCGAATAATAACAAGGTAAACAAACAAATGCCGAGTATAAATAGCAA CAATGATGCAGGAGGAGGGGATTCGAGCTCAGGGGAGGTGGAGAGCCATCACTCTATAGGGAAGAAGTTGATGAAGTTTGTGGACATGTCGGAGATGAGT AAAGGGCCGAAAGATCCACCGGGGCATTGGTTGGTAACTGGAGGGAAGCTGGGAGTGGAGAAAGGCAAGGTTGTGGTGAGAGTAAAGTACTCGTTGTTGA ACTACTGA
AA sequence Show only first row Show all	>Lus10025153 pacid=23167759 polypeptide=Lus10025153 locus=Lus10025153.g ID=Lus10025153.BGIv1.0 annot-version=v1.0 MGLKAGKVEAEGRELEKYCDEMGESGIGTAAALHTAINSVQALGRGFDVNFDTRLLYCKGVAGSRVVQIDQDHTRDLFLYDDVVVPRVSRDIRNSPGSHG RQSSGVCTFPEMVEYFNKKAHLSGSSPIGSFNSAFSFSGSKHIDAAVTKTLSMDGYYIPLAKVELFRSPLVLQENVKRAVPTFWDPASLASFIETFGTHV ITSVTVGGKDVIFVKQHQSSALTKMEMKNYVQDIGNQRFSDSEGHTSSGSCSFLIFQNADAGIFNSQGIYPQPTTTYLTGKEDVTVIFRRRGGDDLEQNH IRWARTVRGSPDVVHMTFVPITDLLNTPGKDHLARAIGLYLECKATRLLHHHYFLFLMGSNRKFILLLTVVSSSSALSIISFFSDKPQIEELRYFLEFQI PRLWAPVRDNIPGHQRKDPVCPFLQFSIMGQKLYVSQEQISVGRKPVTGLRLCLEGAKQNRLSIHVQHLGRGPEEQDGRWFEPVKWKNFSHVSTAPIENP ESFIGDNIGVFVVTGAQLGVWDFGSRKVLYMKLLYSRLPGCTIRRSLWDHSPNNNKVNKQMPSINSNNDAGGGDSSSGEVESHHSIGKKLMKFVDMSEMS KGPKDPPGHWLVTGGKLGVEKGKVVVRVKYSLLNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	1.0	0.8715
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	1.7	0.8678
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	2.4	0.8687
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	3.7	0.8471
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	4.8	0.8229
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	4.9	0.8391
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	8.2	0.8272
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	9.4	0.8514
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	9.7	0.8264
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	11.1	0.8173

Compare expression of checked genes

Lus10025153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.