Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01850 491 / 3e-175 Protein kinase superfamily protein (.1) AT3G27560 379 / 1e-130 ATN1 Protein kinase superfamily protein (.1) AT5G40540 376 / 2e-129 Protein kinase superfamily protein (.1) AT5G50180 365 / 2e-125 Protein kinase superfamily protein (.1) AT5G66710 275 / 4e-89 Protein kinase superfamily protein (.1) AT3G50730 231 / 2e-72 Protein kinase superfamily protein (.1) AT3G50720 229 / 1e-71 Protein kinase superfamily protein (.1) AT1G62400 227 / 2e-71 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 221 / 2e-68 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 215 / 6e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025236 [exp] 664 / 0 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10032086 [exp] 383 / 2e-132 AT5G50180 565 / 0.0 Protein kinase superfamily protein (.1) Lus10035233 [exp] 382 / 5e-132 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10026034 [exp] 278 / 7e-91 AT5G66710 342 / 1e-115 Protein kinase superfamily protein (.1) Lus10020018 [exp] 226 / 2e-70 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 224 / 3e-69 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10015541 [exp] 225 / 9e-67 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10025442 [exp] 216 / 1e-65 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10011173 [exp] 216 / 2e-65 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134900 [exp] 518 / 0 AT5G01850 487 / 3e-174 Protein kinase superfamily protein (.1) Potri.017G065500 [exp] 382 / 9e-132 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.001G343900 [exp] 377 / 4e-130 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 229 / 2e-71 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 227 / 2e-70 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.011G022800 [exp] 225 / 4e-70 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 224 / 1e-69 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 224 / 2e-69 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 221 / 2e-68 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 217 / 2e-67 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025154 pacid=23167870 polypeptide=Lus10025154 locus=Lus10025154.g ID=Lus10025154.BGIv1.0 annot-version=v1.0 ATGAGCTGCAGAAGAGAGAGGAACGAGGGAGGCGCAGACGTAGAAGATGGTTACGGACGGCGGTCAGTTGGAAGGTCTACGGAGAGACGGTCAAAATCTG GCTCGGGAAACGGTTCGATCATATCTCCACGACAGTCGATTGACGAGACTCGTCTCATTGATGCTAATTCGTTGTTTATAGGATTGAAAATTGGCGAGGG AGCTCATGGGAAGGTCTATGAAGGAAGATTTGGTGAACGAATTGTTGCGATCAAAGTTCTCCACCGTGGTAGCACTTCTGATGAAAGGTCAGCGCTTGAG AATCGGTTTGCCCGCGAGGTAAACATGATGTCACGGGTTAAACACGAGAATCTTGTCAAGGTGAGTTGCACCTCTCAGTTTATTGGAGCTTGCAAAGATC CTTTGATGGCAATTGTGACCGAGCTGCTGCCTGGGATGTCTCTACGCAAATATCTCACAAGTATCCGTCCAAACAAATTAGAGCTTCCTTTAGCCTTGAG CTTTGCTCTTGATATTGCTCGAGCTTTGGATTGTCTGCATGCTAATGGGATCATACACAGAGATCTTAAACCAGATAACCTGTTGTTAACAGCAGATCAG AAGTCTGTGAAGCTTGCAGATTTTGGACTGGCAAGGGAAGAAACTGTGACTGAGATGATGACTGCAGAGACAGGAACCTACCGTTGGATGGCTCCAGAGC TGTATAGCACCGTAACCTTACGGCAAGGAGAGAAAAAGCATTACAACAACAAGGTCGACGTCTATAGTTTTGGGATCGTTCTGTGGGAACTACTGACCAA CCGCATGCCATTTGAAGGCATGTCAAATTTGCAAGCTGCTTATGCTGCCGCGTTTAAGCAAGAGAGGCCTAGCATGTCAGATGATATACCTCCAGAGCTA GCGTTCATCATACAGTCATGCTGGGTGGAGGACCCTAACATGAGGCCAAGCTTCAGCCAGATCATACGTATGCTGAACGCATTCCTTTTCACACTCTCAC CGCCACCACCCGAACTAAAACCTGAACCGAACGAACAAGACGAACCAGAAGCAGCTGCAACTCCTTCAAGTAATGGCTCCGTGACGGAGTTCTCCGCCCG GGCTAGGGGGAAGTTCAGTTTCCTTAAGCAACTCTTCGCTGCCAAGAGGACAAAGAACTCCCAGTGA
AA sequence Show only first row Show all	>Lus10025154 pacid=23167870 polypeptide=Lus10025154 locus=Lus10025154.g ID=Lus10025154.BGIv1.0 annot-version=v1.0 MSCRRERNEGGADVEDGYGRRSVGRSTERRSKSGSGNGSIISPRQSIDETRLIDANSLFIGLKIGEGAHGKVYEGRFGERIVAIKVLHRGSTSDERSALE NRFAREVNMMSRVKHENLVKVSCTSQFIGACKDPLMAIVTELLPGMSLRKYLTSIRPNKLELPLALSFALDIARALDCLHANGIIHRDLKPDNLLLTADQ KSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSMSDDIPPEL AFIIQSCWVEDPNMRPSFSQIIRMLNAFLFTLSPPPPELKPEPNEQDEPEAAATPSSNGSVTEFSARARGKFSFLKQLFAAKRTKNSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01850			Protein kinase superfamily pro...		Lus10025154 [exp]	0	1
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	2.8	0.8208
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	10.5	0.7888
AT2G25320			TRAF-like family protein (.1)		Lus10005821 [exp]	12.4	0.7827
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	16.1	0.7542
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	18.1	0.8006
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	23.9	0.7099
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	24.0	0.7397
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	24.3	0.7430
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	25.0	0.7765
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	28.1	0.7551

Compare expression of checked genes

Lus10025154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.