Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38510 544 / 0 MATE efflux family protein (.1) AT4G29140 351 / 5e-117 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G58340 350 / 1e-116 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 330 / 5e-109 MATE efflux family protein (.1) AT5G52050 329 / 1e-108 MATE efflux family protein (.1) AT5G19700 326 / 2e-107 MATE efflux family protein (.1) AT1G71870 296 / 9e-96 MATE efflux family protein (.1) AT5G49130 267 / 9e-85 MATE efflux family protein (.1) AT5G52450 195 / 2e-57 MATE efflux family protein (.1) AT1G71140 185 / 2e-53 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025237 [exp] 754 / 0 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 375 / 3e-126 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 347 / 6e-115 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 345 / 2e-114 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10007231 [exp] 345 / 2e-114 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10028230 [exp] 291 / 2e-93 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10009788 [exp] 280 / 2e-89 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 209 / 2e-62 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 201 / 1e-59 AT5G52450 608 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134800 [exp] 547 / 0 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 383 / 4e-129 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 378 / 2e-127 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 375 / 4e-126 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 351 / 1e-116 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 323 / 2e-106 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 323 / 2e-106 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 314 / 6e-103 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 313 / 3e-102 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.012G051900 [exp] 215 / 1e-64 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10025156 pacid=23167827 polypeptide=Lus10025156 locus=Lus10025156.g ID=Lus10025156.BGIv1.0 annot-version=v1.0 ATGAAAGGCTTATCAGTAGGCATGGATCCCATCTGCGGCCAAGCCTTTGGTGCCAAGAGATGGGCAGTTCTCAGCCAAACTTTCCAGAAAATGCTATGTC TTCTCCTTTTCGCTTCTACATTACTAATCTGCCTTCTATGGCTCAACCTGGAGCCCATATTCCTCAGATTCGGTCAGGATCCTGACATCATCAAATTCGC CAAGGTCTACATCATCTACTGCATCCCTGAACTCATAGCTCAAGCCATCCTCCATCCCATGAGATCCTTCCTTAGGACTCAAGGCTTGACCACTCCTCCA ACTATAGCAGCAATCATTGCAGCCATCCTCCACACGCCCATCAACTACATTCTAGTCATAAAACTCAACCTCGGTGCGAAAGGAGTCGCCTTGGCTCTAG CTTGCAGCACCATGAACATGAACATTGGACTTTTGATATACATGGCCGTTTCGCCAAAGCCAATCAAACCATGGCGTGGATTGACATTCATCTCAATGTT CCAAGGATGGTGGCCTTTGTTATCTCTGGCATTGCCTTCTGTAATATCAGTCTGCCTCGAGTGGTGGTGGTACGAGATAATGCTATTCCTCTGCGGCTTA CTCAGCAACCCGAAAGCCAGTGTATCAGCCACTGGGATCCTCATCCAGACGACGGGTTTGCTGTACGTTTTCCCGTTTTCGCTGAGTTCGGGTTTGAACA TTAGAGTGAGTCACGCTCTGGGTGCAGGACAGCCAACTCGTGCACAATGGACAACCATAATTGGGATCATTCTGGCATTTGGGTATGCAGTCATAGCCTG TGTTTTCACAGCTCTCTTAAGATCGGATTGGGGGAAGATGTACACGTCGGATCCAGAGGTCATAGAAATGATCTCGATCGGACTTCCGATACTAGGGTTG TGTGAACTAGGGAACGCGCCTCAAACAGCAGCGTGTGGAGTCCTGACTGGGACAGCTCGTCCTAAAGAAGGCGCCCGGATAAACTTGTTTGCATTTTACT TGGTGGGTTTCCCAGTAGCGATTCTCCTCACGTTCCAATGCAACATGGGTTATCGAGGGTTGTGGCTTGGGTTATTCTCAGCACAGATTGCGTGTGTTTC GATGATGCTATACACCATCCTTGGAACAGATTGGAAACATCAGGCTAAAAGGGCTGAGGAGTTGACTGCTGCTGCGGGAGAACGGGACGATTTGGAAGAT GGCTTGCTCCCTCCTGCAGCTAGTAACAGTGAATATCAATAA
AA sequence Show only first row Show all	>Lus10025156 pacid=23167827 polypeptide=Lus10025156 locus=Lus10025156.g ID=Lus10025156.BGIv1.0 annot-version=v1.0 MKGLSVGMDPICGQAFGAKRWAVLSQTFQKMLCLLLFASTLLICLLWLNLEPIFLRFGQDPDIIKFAKVYIIYCIPELIAQAILHPMRSFLRTQGLTTPP TIAAIIAAILHTPINYILVIKLNLGAKGVALALACSTMNMNIGLLIYMAVSPKPIKPWRGLTFISMFQGWWPLLSLALPSVISVCLEWWWYEIMLFLCGL LSNPKASVSATGILIQTTGLLYVFPFSLSSGLNIRVSHALGAGQPTRAQWTTIIGIILAFGYAVIACVFTALLRSDWGKMYTSDPEVIEMISIGLPILGL CELGNAPQTAACGVLTGTARPKEGARINLFAFYLVGFPVAILLTFQCNMGYRGLWLGLFSAQIACVSMMLYTILGTDWKHQAKRAEELTAAAGERDDLED GLLPPAASNSEYQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	7.3	0.8799
					Lus10003893 [exp]	8.7	0.8843
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	12.0	0.8566
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	12.2	0.8804
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	14.1	0.8727
AT3G48200			unknown protein		Lus10008827 [exp]	15.3	0.8471
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10030347 [exp]	15.4	0.7865
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	17.1	0.8487
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	17.7	0.8772
AT5G21910			unknown protein		Lus10038069 [exp]	20.0	0.8753

Compare expression of checked genes

Lus10025156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.