Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33640 381 / 5e-126 DHHC-type zinc finger family protein (.1) AT4G15080 338 / 1e-107 DHHC-type zinc finger family protein (.1) AT3G22180 319 / 2e-100 DHHC-type zinc finger family protein (.1) AT1G69420 222 / 8e-65 DHHC-type zinc finger family protein (.1.2) AT4G01730 149 / 8e-39 DHHC-type zinc finger family protein (.1) AT5G04270 65 / 1e-11 DHHC-type zinc finger family protein (.1) AT4G24630 65 / 5e-11 DHHC-type zinc finger family protein (.1) AT3G26935 65 / 5e-11 DHHC-type zinc finger family protein (.1) AT5G41060 62 / 5e-10 DHHC-type zinc finger family protein (.1.2) AT5G05070 61 / 8e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016036 [exp] 773 / 0 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 349 / 1e-111 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 346 / 1e-110 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 221 / 3e-65 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 218 / 3e-64 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 213 / 2e-62 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 214 / 1e-61 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 161 / 5e-43 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 117 / 6e-28 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006900 [exp] 563 / 0 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 330 / 3e-104 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 328 / 9e-104 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254432 [exp] 282 / 2e-90 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 233 / 2e-72 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 229 / 2e-67 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 221 / 2e-64 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.014G112000 [exp] 162 / 1e-43 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 158 / 3e-42 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 66 / 3e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025157 pacid=23167824 polypeptide=Lus10025157 locus=Lus10025157.g ID=Lus10025157.BGIv1.0 annot-version=v1.0 ATGGAGGTCCATCTGCTAGCAATGGTCCCTCATGTTGTGCAATGCTGGGAGGTTTTTTCTGTGGTTTTCTGTTCAAAGGAGACTGTCGTAGTGATGAAGA TATGCATTCTGGAGAGGATGCTTTGTTCTGCACATTGTGCAATGCTGAGGTATGCACCTGGTATGGTTATGTTTAGCATACACGTCGAGACAATAACGTA CTTGAAATGGAAGTCGAGGGAAGCAACGGTTCGCAAGTTCAGCAAGCATTGCAGAAGTTGTGATAAATGTGTTGATGGATTCGATCACCATTGTCGATGG TTGAACAATTGCGTAGGGAGGCAAAATTACATCAGCTTTATAACACTGATGGCAACTAGCCTTGTTTGGCTTGCTGTTGAGTTTGGCATTGGAGTTGCTG TCCTTGTCAGATGTTTCGTGGATCGGAAGACTATGGAACATCAAATATCAGAAAAGCTTGGCATTGGATTCTCCAGACCTCCATTTGCTACAGTAGTGGC CGTCTGCACTGTAGTATCTTTCCTCGCCACGGTCCCCCTGGGTGAACTATTCTTCTTCCACATGATTCTGATTAGAAAGGGTATAACAACGTACGAGTAT GTCGTTGCCATGAGAACCCAAAGCGAACCTCCGGGACCATCAGTTGATGGAGGTGACCAGCAAAGTCTTCCATCATCACCCACCAATTCAGCTGTAACAG CCATCAGCGGGAGAAGCTCCCTTGGCATGGGCTTGCAATACAAAGGTGCTTGGTGTACTCCTCCTCGAATCTTCATGGACAACCCGGATGAGATTATCCC ACACTTGGAGCCAGGGCGTCTTCCATCGACCATCGACCCGGATACATTACCAGAAGGCAAGAAGGGGAAAAAACTACCACAACATCCAGTTCGAATCAGC GCATGGAAACTCGCGAAGCTGGACTCCAGCGAGGCAATGAAGGCAGCTGCTAAGGCTAGAGCATCCTCGTCGGTTCTGAAGCCAATGAGTTCTCGACAGC ACCAACCTTACGACGCTGATCATATGTCCGGGAGCAATTCGTACGCGCCAAGTAACATGAGCCAGACAAGCAGGGAGGATACTGAATCGTGCCGGCACAG CATAAGCAACATGAGCAGTGCAAACGTGTCCCAGCTTGCAACATCTCCATTGCCACAACAAACTACTTCGAGTAGTCGAGATCATTTCAACCCAATGTAT CAATCTTCAGCAGGACAGTCTCCATTCTCAACTCAACCGGTCCAAACAAACGTGAACGCCACATCAGCAAATAGCAACAACGCGGCTCGAGTTCAATCGG GTGTGAGGAGGAACAACAACATGGAGAACATTAGAGCTTCTTCAGTTTATTGGGACCCGGATGCCGGGAGATTTGTGTCATCGACTTCTAGAGGTGTAGG TTCTAACAATGCTGGTTCTTCTTCCCGGGCTCTGGGGACCGAGCTTATGTACGCGGAGCAGTCGATATTTTACGGAGGACCGGTTGTGGGTCAGCAGCAG CAACAGCAGCATGGGAGCGGCAGAGTAGGGAATGGGGAAAGAGGGATGATGACGACTGCTCATCAAGGGAGATCTCAGAGGGGTGGGCAGCTACCAGTGT TTGTTCCCAGTGATTATCATAATCAAAACCAGTTCCCTCCATCTTATAGATTGCCGTGA
AA sequence Show only first row Show all	>Lus10025157 pacid=23167824 polypeptide=Lus10025157 locus=Lus10025157.g ID=Lus10025157.BGIv1.0 annot-version=v1.0 MEVHLLAMVPHVVQCWEVFSVVFCSKETVVVMKICILERMLCSAHCAMLRYAPGMVMFSIHVETITYLKWKSREATVRKFSKHCRSCDKCVDGFDHHCRW LNNCVGRQNYISFITLMATSLVWLAVEFGIGVAVLVRCFVDRKTMEHQISEKLGIGFSRPPFATVVAVCTVVSFLATVPLGELFFFHMILIRKGITTYEY VVAMRTQSEPPGPSVDGGDQQSLPSSPTNSAVTAISGRSSLGMGLQYKGAWCTPPRIFMDNPDEIIPHLEPGRLPSTIDPDTLPEGKKGKKLPQHPVRIS AWKLAKLDSSEAMKAAAKARASSSVLKPMSSRQHQPYDADHMSGSNSYAPSNMSQTSREDTESCRHSISNMSSANVSQLATSPLPQQTTSSSRDHFNPMY QSSAGQSPFSTQPVQTNVNATSANSNNAARVQSGVRRNNNMENIRASSVYWDPDAGRFVSSTSRGVGSNNAGSSSRALGTELMYAEQSIFYGGPVVGQQQ QQQHGSGRVGNGERGMMTTAHQGRSQRGGQLPVFVPSDYHNQNQFPPSYRLP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33640			DHHC-type zinc finger family p...		Lus10025157 [exp]	0	1
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	4.7	0.7972
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	7.1	0.7894
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	16.0	0.7586
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	20.4	0.7349
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	25.1	0.7480
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	25.4	0.7652
AT5G08680			ATP synthase alpha/beta family...		Lus10024114 [exp]	27.8	0.6996
AT3G49990			unknown protein		Lus10015447 [exp]	29.3	0.7511
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	37.3	0.6410
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	37.5	0.7166

Compare expression of checked genes

Lus10025157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.