Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20810 236 / 2e-78 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 92 / 2e-22 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G18170 42 / 0.0001 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 42 / 0.0004 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016037 [exp] 391 / 2e-139 AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 83 / 8e-19 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027729 [exp] 70 / 6e-14 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038954 [exp] 40 / 0.0006 AT1G18170 193 / 1e-61 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254900 [exp] 246 / 2e-82 AT1G20810 272 / 5e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 87 / 3e-20 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G467100 [exp] 46 / 8e-06 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 43 / 9e-05 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10025158 pacid=23167771 polypeptide=Lus10025158 locus=Lus10025158.g ID=Lus10025158.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTCCAATTGGGGGGAGCTTAGAGATATACAGGTCTCCCGCCGGGTCAACAACAAATCATTATCATCGCAAATCATGGATGACAACGGCGG CACTACAAGAGACGGGAGTCGGGTCAAGGAACCAAGTATCCGTATGCACTTCCAGGAGGAAGGCGATGCTCATCGCCACATTGCCGACTTTACTACTGGG AGCGGTCACGATGCCATCAGCTGAGGCCAGAGAGAGACGCAGCCGCAAGAAGATCCCTCCCGAAGACTATCTCACTAGCCCAGAAGGATTGAAATACTTT GACATTGAGGAAGGAAAAGGACCCGTCGCCGAGAAAGGATCCACTGTTCTTGTGCATTTTGATTGTATCTACAGAGGAGTCACGGCTGTTTCAAGTCGGG AGTCTAAGCTGCTTGCTGGAAATCGCATCATTGCTCAGCCATATGAGTTCCAAGTAGGGGCGCCGCCGGGGAAGGAGAGGAAGAGAGAGTTCGTAGACAA CCCAAATGGTCTCTTCTCAGCACAAGCGTCTCCTAAACCACCGCCTGCAATGTACACCATCACCCAGGGAATGAAAGTTGGAGGAAAGAGGACAGTGATC GTCCCGCCCGAAGCTGGATATGGAAAAAGGGGATTGTATGAGATTCCACCGAAACTCTGTCCACCTCCAACCCCACATGTTCAGAAGTTGGTCTCGGGAC TCAGCAGCGGTGGAGAAAACTTAAACAGAAAAGCTTCTAACATCAATTATGCAGTCCTCGGTCTACCAAAAACTCATGAGTAG
AA sequence Show only first row Show all	>Lus10025158 pacid=23167771 polypeptide=Lus10025158 locus=Lus10025158.g ID=Lus10025158.BGIv1.0 annot-version=v1.0 MASIPIGGSLEIYRSPAGSTTNHYHRKSWMTTAALQETGVGSRNQVSVCTSRRKAMLIATLPTLLLGAVTMPSAEARERRSRKKIPPEDYLTSPEGLKYF DIEEGKGPVAEKGSTVLVHFDCIYRGVTAVSSRESKLLAGNRIIAQPYEFQVGAPPGKERKREFVDNPNGLFSAQASPKPPPAMYTITQGMKVGGKRTVI VPPEAGYGKRGLYEIPPKLCPPPTPHVQKLVSGLSSGGENLNRKASNINYAVLGLPKTHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10025158 [exp]	0	1
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	3.5	0.8979
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	6.0	0.8917
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020723 [exp]	11.0	0.7635
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	14.8	0.8720
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	18.3	0.8706
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	18.8	0.8222
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	21.6	0.8795
					Lus10029097 [exp]	21.7	0.7994
AT5G27290			unknown protein		Lus10018966 [exp]	22.0	0.8652
AT2G44590		ADL1D	DYNAMIN-like 1D (.1.2.3)		Lus10030928 [exp]	28.8	0.8207

Compare expression of checked genes

Lus10025158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.