Plant FIBer expression Database

Lus10025159 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76400 785 / 0 Ribophorin I (.1)
AT2G01720 456 / 7e-156 Ribophorin I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016038
[exp]
724 / 0 AT1G76400 595 / 0.0 Ribophorin I (.1)
Lus10023524
[exp]
466 / 2e-159 AT2G01720 650 / 0.0 Ribophorin I (.1)
Lus10040410
[exp]
463 / 2e-158 AT2G01720 645 / 0.0 Ribophorin I (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G006600
[exp]
860 / 0 AT1G76400 817 / 0.0 Ribophorin I (.1)
Potri.005G255000
[exp]
851 / 0 AT1G76400 816 / 0.0 Ribophorin I (.1)
Potri.010G223500
[exp]
488 / 3e-168 AT2G01720 683 / 0.0 Ribophorin I (.1)
Potri.008G038700
[exp]
487 / 8e-168 AT2G01720 677 / 0.0 Ribophorin I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04597 Ribophorin_I Ribophorin I
Representative CDS sequence
>Lus10025159 pacid=23167883 polypeptide=Lus10025159 locus=Lus10025159.g ID=Lus10025159.BGIv1.0 annot-version=v1.0
ATGACGCTCGGACATGTGGTTAAGCTTAGGCTTGATTTTCTTCTGTTGATCATTGCGTTCCTCGCCGTGCCTGCATTTTCCGATCTGATCGTTTCCAAAG
TCGATCGACGGATTGATTTGACCTCACAGATTGCACGCGTAACTTCTACACTCAAGGTTGAGAATGTTGGTTCAAGTCCGGTTTCAGAGGTCCTGCTGTC
TGTTCCTGACCCCCAGGCCAAGAATTTGGCTTATTTGACAGCCAAACTCAGTGAAGGGAAAGGGAAAGGGAAAGCCAAAACTTCTGCTGTTACTCTCAAG
GTTGAACCTGCCAGTCCAAAAGGACTGCCACAGGCCTTGAGTTTCTATTCGATATCATTGCCCAATCCTTTGGCTGATGGCGAGAGTGTCACCTTTGATG
TATTGGCCGTATTTACCCATAGTTTGCGACCGTTTCCAGAGAAGATCACTCAGGCTGACATTCAGCTGGTGTTGTTCCAAGATAGTGCACATTATCTCTC
TCCCTATCAAGTCAAAGCCCAATCACTGGCTATTAAACTGCCTCCGGCAAGGATTGAGTCATACACGAAACTCGAGAACACAAAACTTCAGGGCTCAGAT
ATCAAATATGGCCCTTATGAGAACACCCCTCCTTTCACATACACCCCTGTTGTTGTGCATTTTGAAGCCAATCAACCATTTGCTGTTGCTCAGGAACTTG
TGAGAGAGATAGAGATCTCCCACTGGGGGAATGTGCAAGTGACTGAGCATTATAACATTGCACATGGAGGTGCCATTAGTACGGGTGAATTTTCCAGGCT
TGATTTCCAGTCCAAACCCCAAATCCGTGGTGCATCAGCCTTTAAGCATCTTATTGCAAAATTGCCTCCCAGAGCGCATTCTATTTATTACAGAGATGCT
ATTGGTAACATATCAACATCCCATGTGCGGAGTGACTCAAAGAAGACAGAAATACTAATTGAGCCTAGATTTCCAATTTTTGGTGGTTGGAGAACTGCAT
TTACTATTGGATATGGGTTGCCGCTTCAGGATTTTTTGTTCGAGTCAGAGGGGAAACGTTTCTTAGACTTCTCTTTCGGTTCCCCTGTGATTGACTTGGT
TATCGATAATCTCATTTTGAAGGTTGTCTTGCCTGAGGGATCCAAGTATCTTTCTCATTCTGCTCCATTCTCTGTGCAAGAGGAGCAAGAGGTAAAAATG
TCGCACTTGGACATTTTTGGTCGACCTGTTATTGTGCTGAAAAAGTCAAACGTTGTGCCAGAGCATAATCAACATTTCCAGGTGTACTACAAGTTCAATA
AACTTGCAACGCTCACCGAGCCATTCATGTTGATTTTTGGAATCTTCTTCCTCTTCGTTACTTGCATAGTTTATGTGCATGTTGACATGTCAATCTCCAA
ATCTTCTGCTTCCTATTTAGCAAAACTGCAGTGGGATGAGGTACGAGCAACAGTGCAGCAGATTGAGAATATCATTAACCAGTGCTTAGCTGTGCACGAA
AAGCTAGAAGCATCTCTATGTGATCTTTCTAGAACAGGAGATGTCCAAGCTTGTAAAGCAGCCCGAAAGTCGGCCGATGGCTCGTTGAAGGAGCTGTCAA
AAGAGTTAAAGCCCTTGACGTCACACTTGGTGTCTTCTCCTCTCGCTGGTGCTACTCATATATTGCTCAAGGTGGAGGAGCTTGTAGCAAAGGAGAAAGA
ACTGGAGGAGCGGCTGATGGCAAAGCACTCGACTATAGTCGATTCATACGAGAAGAAACACGGAGGTCGGGAAACTGAGAACCGAGTCGCATCTGTGCAA
CAAAAGATCGTAGCTTTGAGGCAGGATGTTGAAGATCTTCTCGAGTACATCGACGAGATATGA
AA sequence
>Lus10025159 pacid=23167883 polypeptide=Lus10025159 locus=Lus10025159.g ID=Lus10025159.BGIv1.0 annot-version=v1.0
MTLGHVVKLRLDFLLLIIAFLAVPAFSDLIVSKVDRRIDLTSQIARVTSTLKVENVGSSPVSEVLLSVPDPQAKNLAYLTAKLSEGKGKGKAKTSAVTLK
VEPASPKGLPQALSFYSISLPNPLADGESVTFDVLAVFTHSLRPFPEKITQADIQLVLFQDSAHYLSPYQVKAQSLAIKLPPARIESYTKLENTKLQGSD
IKYGPYENTPPFTYTPVVVHFEANQPFAVAQELVREIEISHWGNVQVTEHYNIAHGGAISTGEFSRLDFQSKPQIRGASAFKHLIAKLPPRAHSIYYRDA
IGNISTSHVRSDSKKTEILIEPRFPIFGGWRTAFTIGYGLPLQDFLFESEGKRFLDFSFGSPVIDLVIDNLILKVVLPEGSKYLSHSAPFSVQEEQEVKM
SHLDIFGRPVIVLKKSNVVPEHNQHFQVYYKFNKLATLTEPFMLIFGIFFLFVTCIVYVHVDMSISKSSASYLAKLQWDEVRATVQQIENIINQCLAVHE
KLEASLCDLSRTGDVQACKAARKSADGSLKELSKELKPLTSHLVSSPLAGATHILLKVEELVAKEKELEERLMAKHSTIVDSYEKKHGGRETENRVASVQ
QKIVALRQDVEDLLEYIDEI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76400 Ribophorin I (.1) Lus10025159
[exp]
0 1
AT1G76400 Ribophorin I (.1) Lus10016038
[exp]
1.0 0.9303
AT1G80350 FTR, FRC2, FRA2... KATANIN 1, FAT ROOT, FURCA2, F... Lus10011477
[exp]
2.0 0.9023
AT4G00740 QUA3 QUASIMODO 3, S-adenosyl-L-meth... Lus10041363
[exp]
3.5 0.8768
AT1G48110 ECT7 evolutionarily conserved C-ter... Lus10017111
[exp]
4.5 0.8495
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Lus10022556
[exp]
6.5 0.8536
AT1G80350 FTR, FRC2, FRA2... KATANIN 1, FAT ROOT, FURCA2, F... Lus10023115
[exp]
7.2 0.8714
AT5G42080 RSW9, DRP1A, AG... RADIAL SWELLING 9, DYNAMIN-REL... Lus10003873
[exp]
8.8 0.8648
AT1G04910 O-fucosyltransferase family pr... Lus10032603
[exp]
8.8 0.8546
AT4G33945 ARM repeat superfamily protein... Lus10012060
[exp]
9.1 0.7940
AT5G47400 unknown protein Lus10004740
[exp]
9.5 0.8531

Lus10025159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.