Plant FIBer expression Database

Lus10025160 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76405 162 / 3e-51 unknown protein
AT1G20816 148 / 5e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016039
[exp]
311 / 5e-110 AT1G76405 211 / 2e-70 unknown protein
Lus10025161
[exp]
301 / 4e-106 AT1G76405 214 / 6e-72 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G255100
[exp]
191 / 6e-63 AT1G76405 236 / 2e-80 unknown protein
PFAM info
Representative CDS sequence
>Lus10025160 pacid=23167859 polypeptide=Lus10025160 locus=Lus10025160.g ID=Lus10025160.BGIv1.0 annot-version=v1.0
ATGGATACGTCTCTGCGATACAGTGGAGACTCGAAATCTCTCAGGATTCATGCCAAGCAGAAGCTATCCATTGTTCCCAATACCCATCTGCAGTTTCATG
GGGAGCTGGATACAAAGGTTGGAGTTGCAAGGCAGCTGGATTCAAAGCTTGGAAACCCAAGTCATCTCAGTGGGTTTATAAGACACTTCCTCCCAGACTT
GGGTGCTAGCATGGGTGCGGGAGTGCAATATGACAAATATGAAAAGCTTCGGTACACCCTCCGAGGCAAGAAGGCCTTCCCTATCACCAGCGACGGTTTG
TTCAACTTCAATGTCAAGGGACGCTACTATCTTGACAAAAATTTCAAGGAGAAGCGACCAACAGCAGCAGCTGAGTTATCGTGGAGTATATTCAATTTCC
AGAAAGACCAAGATGTGCGATTCAAAGTCGGATATGAGGTGCTTGACAAGCTTGTTGATCCCCCCATGTATCTGGTGTTTTTCGTGCTGCTTTCAGTTGC
CATATCTGCAGATTAG
AA sequence
>Lus10025160 pacid=23167859 polypeptide=Lus10025160 locus=Lus10025160.g ID=Lus10025160.BGIv1.0 annot-version=v1.0
MDTSLRYSGDSKSLRIHAKQKLSIVPNTHLQFHGELDTKVGVARQLDSKLGNPSHLSGFIRHFLPDLGASMGAGVQYDKYEKLRYTLRGKKAFPITSDGL
FNFNVKGRYYLDKNFKEKRPTAAAELSWSIFNFQKDQDVRFKVGYEVLDKLVDPPMYLVFFVLLSVAISAD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76405 unknown protein Lus10025160
[exp]
0 1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Lus10003521
[exp]
5.2 0.8431
AT1G02280 PPI1, ATTOC33, ... PLASTID PROTEIN IMPORT 1, tran... Lus10010292
[exp]
5.3 0.8169
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Lus10015701
[exp]
9.7 0.8462
AT2G30695 unknown protein Lus10008363
[exp]
12.0 0.8563
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Lus10024772
[exp]
13.9 0.7155
AT1G16930 F-box/RNI-like/FBD-like domain... Lus10026190
[exp]
14.0 0.8047
AT5G40160 EMB139, EMB506 embryo defective 506, EMBRYO D... Lus10032165
[exp]
25.2 0.8348
AT5G10620 methyltransferases (.1) Lus10020175
[exp]
25.4 0.8346
AT1G12700 RPF1 RNA processing factor 1, ATP b... Lus10009201
[exp]
25.6 0.7095
AT2G41950 unknown protein Lus10029301
[exp]
30.4 0.8055

Lus10025160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.