Plant FIBer expression Database

Lus10025161 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76405 214 / 4e-72 unknown protein
AT1G20816 202 / 3e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016039
[exp]
357 / 3e-128 AT1G76405 211 / 2e-70 unknown protein
Lus10025160
[exp]
300 / 1e-105 AT1G76405 161 / 5e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G255100
[exp]
239 / 6e-82 AT1G76405 236 / 2e-80 unknown protein
PFAM info
Representative CDS sequence
>Lus10025161 pacid=23167890 polypeptide=Lus10025161 locus=Lus10025161.g ID=Lus10025161.BGIv1.0 annot-version=v1.0
ATGGATACGTCTCTGCGATACAGCGGAGACTCGAAATCTCTCAGGATTCATGCCAAGCAGAAGCTATCCATTGTCCCCAATACCCATCTGCAGTTTCATG
GGGAACTGGATACAAAGGTTGGAGTTGCAAGGCAGCTGGATTCAAAGCTTGGAAACCCAAGTCATCTCAGTGGGTTTATAAGACACTTCCTCCCAGACTT
GGGTGCTAGCATGGGTGCGGGAGTGCAATATGACAAATATGAAAAGCTTCGGTACACACTCCGAGGGAAGAAGGCCTTCCCTCTCACTAGCGACGGCTTG
TTCAGCTTCAATGTCAAGGGCCGCTACCATCTTGACAAGAATTTCAAGGAGAAGCAACCAACAGCAGCAGCCGAGTTATCATGGAACATATTCAATTTCC
AGAAAGACCAAGATGTGAGGTTGAAAGTTGGTTATGAGGTGCTTGACAAGTTGCCATATCTGCAGATTAGAGAGAACAACTGGACATTCAACGCTGACAT
GAAGGGGCGGTGGAATGTTAGATTTGATTTATGA
AA sequence
>Lus10025161 pacid=23167890 polypeptide=Lus10025161 locus=Lus10025161.g ID=Lus10025161.BGIv1.0 annot-version=v1.0
MDTSLRYSGDSKSLRIHAKQKLSIVPNTHLQFHGELDTKVGVARQLDSKLGNPSHLSGFIRHFLPDLGASMGAGVQYDKYEKLRYTLRGKKAFPLTSDGL
FSFNVKGRYHLDKNFKEKQPTAAAELSWNIFNFQKDQDVRLKVGYEVLDKLPYLQIRENNWTFNADMKGRWNVRFDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76405 unknown protein Lus10025161
[exp]
0 1
AT2G28230 TATA-binding related factor (T... Lus10030830
[exp]
1.7 0.8811
AT5G19370 rhodanese-like domain-containi... Lus10026105
[exp]
2.8 0.8506
AT3G23620 Ribosomal RNA processing Brix ... Lus10027714
[exp]
3.5 0.8721
AT5G40530 S-adenosyl-L-methionine-depend... Lus10022276
[exp]
3.9 0.8661
AT5G19370 rhodanese-like domain-containi... Lus10000413
[exp]
4.9 0.8367
AT5G38890 Nucleic acid-binding, OB-fold-... Lus10004763
[exp]
6.3 0.8461
AT3G56160 Sodium Bile acid symporter fam... Lus10043443
[exp]
8.1 0.8395
AT1G64350 SEH1H Transducin/WD40 repeat-like su... Lus10003896
[exp]
9.2 0.8389
AT3G54200 Late embryogenesis abundant (L... Lus10040941
[exp]
10.2 0.8279
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10041349
[exp]
11.4 0.8304

Lus10025161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.