Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76410 139 / 3e-42 ATL8 RING/U-box superfamily protein (.1) AT1G20823 137 / 4e-41 RING/U-box superfamily protein (.1) AT2G17450 112 / 2e-31 RHA3A RING-H2 finger A3A (.1) AT5G05280 97 / 2e-25 RING/U-box superfamily protein (.1) AT4G35480 95 / 1e-24 RHA3B RING-H2 finger A3B (.1) AT1G49220 91 / 1e-22 RING/U-box superfamily protein (.1) AT1G49210 90 / 3e-22 RING/U-box superfamily protein (.1) AT1G49200 88 / 9e-22 RING/U-box superfamily protein (.1) AT3G18773 87 / 4e-21 RING/U-box superfamily protein (.1) AT3G10910 85 / 8e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016040 [exp] 217 / 1e-72 AT1G20823 202 / 4e-66 RING/U-box superfamily protein (.1) Lus10030728 [exp] 176 / 3e-56 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10013210 [exp] 174 / 1e-55 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10005814 [exp] 99 / 8e-26 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 97 / 4e-25 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005815 [exp] 94 / 5e-24 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10020859 [exp] 94 / 2e-23 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10006788 [exp] 93 / 2e-23 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005818 [exp] 91 / 2e-23 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006400 [exp] 160 / 2e-50 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 159 / 9e-50 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 124 / 4e-36 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 112 / 1e-31 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 97 / 2e-25 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 96 / 7e-25 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 92 / 3e-23 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 90 / 9e-23 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 90 / 1e-22 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 89 / 3e-22 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025162 pacid=23167810 polypeptide=Lus10025162 locus=Lus10025162.g ID=Lus10025162.BGIv1.0 annot-version=v1.0 ATGACTCGTCCAATCAGGTTGCTCGACTCCGTCAATTCCCCGCCGGACGACGACTCAACCCAGCCCTCCCCTCCTCCCGTGAATTCTGACTTCGTCGTCG TACTAGCAGCCCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTCGTCGCCGTCGTTCGCTGCGCTTGGATTCGCCGATTTTCATCCCGCGCCGGCGGCGG AGAAGGAGGAACGGAAGGAAATCCTCCGCCTCCTCGCCCTTCCGCGGCCAACAAGGGCATCAAGAAGAAGATCCTCCGCCCCCCCCCGAAACAGACATTC ACAACCGATTACGCCGCCAAATTCTCCGATTGCGCTATCTGCCTGGCGGAATTCGCCGTGGGGGATGAAATCCGGCTGCTCCCTCAGTGCGGCCACGGAT TCCACGTCAAATGCATCGACACCTGGCTGGAATCCCATTCTTCCTGCCCTTCCTGCCGCCAGATACTGGTCGCTTCAAGGTGCCAGAAGTGCGGCGGTCT CCCCCCTCCCCCGCCCCCCCCCTCCACCGCCGAGCTCTAG
AA sequence Show only first row Show all	>Lus10025162 pacid=23167810 polypeptide=Lus10025162 locus=Lus10025162.g ID=Lus10025162.BGIv1.0 annot-version=v1.0 MTRPIRLLDSVNSPPDDDSTQPSPPPVNSDFVVVLAALLCALICVLGLVAVVRCAWIRRFSSRAGGGEGGTEGNPPPPRPSAANKGIKKKILRPPPKQTF TTDYAAKFSDCAICLAEFAVGDEIRLLPQCGHGFHVKCIDTWLESHSSCPSCRQILVASRCQKCGGLPPPPPPPSTAEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	0	1
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	1.7	0.9019
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	3.5	0.9048
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	5.2	0.9065
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	6.0	0.8859
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	7.1	0.8914
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	7.5	0.8949
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10034662 [exp]	12.2	0.8546
AT2G25625			unknown protein		Lus10013129 [exp]	13.9	0.8855
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	15.0	0.8853
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	17.3	0.8858

Compare expression of checked genes

Lus10025162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.