Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76430 382 / 4e-129 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 362 / 7e-121 PHT1;8 phosphate transporter 1;8 (.1) AT5G43340 297 / 6e-96 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT5G43360 295 / 3e-95 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43370 294 / 1e-94 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43350 293 / 1e-94 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT2G38940 293 / 4e-94 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT2G32830 292 / 7e-94 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT3G54700 281 / 1e-89 PHT1;7 phosphate transporter 1;7 (.1) AT4G08878 119 / 8e-31 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016042 [exp] 591 / 0 AT1G76430 542 / 0.0 phosphate transporter 1;9 (.1) Lus10014754 [exp] 306 / 4e-99 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 301 / 3e-97 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 296 / 3e-95 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10033886 [exp] 289 / 2e-92 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10003560 [exp] 288 / 3e-92 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10016635 [exp] 286 / 2e-91 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10027575 [exp] 265 / 4e-83 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10012860 [exp] 263 / 2e-82 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G256100 [exp] 421 / 3e-144 AT1G76430 613 / 0.0 phosphate transporter 1;9 (.1) Potri.002G005500 [exp] 407 / 1e-138 AT1G76430 572 / 0.0 phosphate transporter 1;9 (.1) Potri.010G071500 [exp] 304 / 1e-98 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 304 / 2e-98 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071700 [exp] 296 / 1e-95 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071600 [exp] 296 / 1e-94 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 292 / 4e-94 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 291 / 1e-93 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.005G175700 [exp] 286 / 6e-92 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175500 [exp] 285 / 2e-91 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10025163 pacid=23167864 polypeptide=Lus10025163 locus=Lus10025163.g ID=Lus10025163.BGIv1.0 annot-version=v1.0 ATGTCGGAGTTCGCGAACAAGAGCACTCGGGGAGCGTTCATCGCTGGGGTGTTCTCGATGCAAGGCTTCGGGATTCTGGCCAGCTCCATCGTCACCGTCG TGGTCTGCAAGGTGTTCCAGGTGTCGACGCAGGGGTTGTCGGGTGATAGCGACCGTACGCCGGCGGGAGCTGACGTGGCGTGGAGGTTGATCCTAATGCT GGGAGCAGTTCCATCGGCACTGACTTACTATTGGCGTATGTTGATGCCCGAAACCGCCAGGTACACAGCATTGGTGGAGAACAACGTTATGCAGGCAGCA AGGGACATGGAGAAGCTACTCGACATCCCACTCTGCCAAATCCAAGAAAATAACCCTCTCCGCGATCATCCCCAACCGTCGGATCAAACCACCAGCACAA CATACACAATCAACGAATTATCTTCCGCAATGACGTCGTCTACCACCACCTTCTTCCGCGACCTCTTCTCCAAACCCTTCCTTGCACTCCACGGCACCAA CCTCATGTCATGCGCCGCCAACTGGTTCCTCCTCGACGTGGCGTTCTACAGCAGCAACCTCTTCCAGTCCCAAATCTACAAGCAGTTCCTCAATCTCGAC ACCTCCTCTGTAGACGTCTACGATGAAGCCATCCGGATCGCCGGCTTCCAAGGCATCCTTGCCATATGCTCCACCATCCCGGGTTACTACTTCACTGTCT TCTTCATCGACCGGGTGGGCCGCCGCAAGATCCAGATCATGGGCTTTTGTCTCATGGGCATCGTTTACTTGGGCCTCGGGATACCTTACTCACACTGGGC CGACAACACCAACGCTGGGTTTCTTATACTGTATGGGCTGACTTTCTTCTTCGCCAACTTTGGGCCCAACACCACGACATTTATCGTGCCGGCGGAGCTG TTCCCGGCGAGGTTTAGGTCCACGTGTCACGGGATATCGGGAGCTGCTGGGAAGATTGGTGCGGTGGTCGGAGCTGTAGGGTTTCAGATGGCGGTGAAGA GTAATGTTGTTGATGGAAACCATAGTAAGAATGTTGATGATGATGATGATGATGGAAATCTTAGTGTTAAGCCTATGACGATTGCGTTGGTTGTGCTGGC GGCTGTTTGTTTTCTGGGGATGGTGATTACATATGCTTTCACTCCTGAAACTATGGGGAGGTCATTGGAAGACAACGAGAGTGATGATGATACAGATGAT GATGATGATGAGAAGGAGGATGATGGCAATACGATTGGTGGAGTGGGTAATTGA
AA sequence Show only first row Show all	>Lus10025163 pacid=23167864 polypeptide=Lus10025163 locus=Lus10025163.g ID=Lus10025163.BGIv1.0 annot-version=v1.0 MSEFANKSTRGAFIAGVFSMQGFGILASSIVTVVVCKVFQVSTQGLSGDSDRTPAGADVAWRLILMLGAVPSALTYYWRMLMPETARYTALVENNVMQAA RDMEKLLDIPLCQIQENNPLRDHPQPSDQTTSTTYTINELSSAMTSSTTTFFRDLFSKPFLALHGTNLMSCAANWFLLDVAFYSSNLFQSQIYKQFLNLD TSSVDVYDEAIRIAGFQGILAICSTIPGYYFTVFFIDRVGRRKIQIMGFCLMGIVYLGLGIPYSHWADNTNAGFLILYGLTFFFANFGPNTTTFIVPAEL FPARFRSTCHGISGAAGKIGAVVGAVGFQMAVKSNVVDGNHSKNVDDDDDDGNLSVKPMTIALVVLAAVCFLGMVITYAFTPETMGRSLEDNESDDDTDD DDDEKEDDGNTIGGVGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	0	1
					Lus10025868 [exp]	2.6	0.9494
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	7.1	0.9108
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	7.2	0.9346
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	7.7	0.9364
					Lus10038232 [exp]	8.1	0.9352
					Lus10020401 [exp]	8.9	0.9197
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	10.8	0.9066
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	11.0	0.9080
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	12.4	0.9201
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	13.9	0.9226

Compare expression of checked genes

Lus10025163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.