Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016042 [exp] 64 / 4e-12 AT1G76430 542 / 0.0 phosphate transporter 1;9 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025164 pacid=23167797 polypeptide=Lus10025164 locus=Lus10025164.g ID=Lus10025164.BGIv1.0 annot-version=v1.0 ATGCCGACTCCGAGCAGGAACCTGAAGCAATTAATTAGGAATGGCCATTCAGTCACGGCTAATGAATGCGAGGCTTCCGAGCACGCAACCCTTAGTGGTG CAGACGGAGAAGCCGCAGCCGAAGGAGCTACAGACCATGATGACAAGAGCCAGACCGTAGACGGAGCGCCTTCCGAAGCGATCCCCGAGGTAGCCGAAGA TGAGCTGGCCGACGGCGGTGCCGAGGAGCGGGACTCCAATCATGACGACGGCGACTTCGAGGGGGAGGTGGTGGTCTTTGTTGTGTGGGTAGTAGATGTG GGCGAGGATGGTGGTGATCGGAGGGATGCAGAAGAGGCTCTAGGCGCCGCTGAAGAGTCCCATCCCGGCCACGATTGTCGCCTTGAAATGGTAGTACTGC GTCCTGGCCGTGTCCATCGCCGACAGCACCCTTGGCGGCGCCATTTTGTAATTCCGTGCGTCTCCGGCTGCGGAGGAGGAGGAGGAGGAGGAAATTAA
AA sequence Show only first row Show all	>Lus10025164 pacid=23167797 polypeptide=Lus10025164 locus=Lus10025164.g ID=Lus10025164.BGIv1.0 annot-version=v1.0 MPTPSRNLKQLIRNGHSVTANECEASEHATLSGADGEAAAEGATDHDDKSQTVDGAPSEAIPEVAEDELADGGAEERDSNHDDGDFEGEVVVFVVWVVDV GEDGGDRRDAEEALGAAEESHPGHDCRLEMVVLRPGRVHRRQHPWRRHFVIPCVSGCGGGGGGGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025164 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	1.0	0.9413
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	3.2	0.9362
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	3.5	0.9225
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	3.5	0.9230
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	4.1	0.8821
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	5.5	0.8991
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	6.5	0.9049
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	7.5	0.9043
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	9.0	0.8637
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	9.2	0.8943

Compare expression of checked genes

Lus10025164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.